View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1900_low_16 (Length: 366)
Name: NF1900_low_16
Description: NF1900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1900_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 11 - 350
Target Start/End: Original strand, 1141604 - 1141943
Alignment:
| Q |
11 |
cagagacaagcaaacatgtttttaattgtaggcctatacaaaaactacataacatgatactaaactagtggaagtgaaacaatatgattataaccaaaag |
110 |
Q |
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| T |
1141604 |
cagagacaagcaaacatgtttttaatgctaggcctatacaaaagctacataacacgatactaaactagtggaagtgaaacaatatgattataaccaaaag |
1141703 |
T |
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| Q |
111 |
ctcaaacacaaaatcaatgttgagacacaaacgtaaggccctgcagataatgatgatgcagaactattggagtgatgactcctgtcataggtggttgatc |
210 |
Q |
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| T |
1141704 |
ctcaaacataaaataaatgttgagacacaaacataaggccctgcagataatgatgatgcagaactattggagtgatgactcctgtcataggtggttgacc |
1141803 |
T |
|
| Q |
211 |
cgccgataactccagcaccgataattccaccacccactcctctgcctattcctctgcctattcctcctccttttcttatggtaacagatagttcatgttt |
310 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1141804 |
cgccgataactccagcaccgataactccaccacccactcctctgcctattcctctgcctattcctcctccttttcttatggtaacagatagttcatgttt |
1141903 |
T |
|
| Q |
311 |
gtgttcattactttccatcatcgcaactctgtggttcaac |
350 |
Q |
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| T |
1141904 |
gtgttcattactttccatcatcacaactccgcggttcaac |
1141943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 37 - 244
Target Start/End: Original strand, 1136976 - 1137183
Alignment:
| Q |
37 |
tgtaggcctatacaaaaactacataacatgatactaaactagtggaagtgaaacaatatgattataaccaaaagctcaaacacaaaatcaatgttgagac |
136 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||| | ||||||||||||||| |||| ||||||||||| |
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| T |
1136976 |
tgtaggcctatacaaaagctacataacatgatactaaactagtggaagtgaaacaatgtaattaaagccaaaagctcaaacataaaagaaatgttgagac |
1137075 |
T |
|
| Q |
137 |
acaaacgtaaggccctgcagataatgatgatgcagaactattggagtgatgactcctgtcataggtggttgatccgccgataactccagcaccgataatt |
236 |
Q |
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| T |
1137076 |
acaaacataaggccctgcagataatgatggtgcagaactattggagcgatgactcccgtgataggcggttgacccgccaataactccagcaccgataatt |
1137175 |
T |
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| Q |
237 |
ccaccacc |
244 |
Q |
| |
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||| |||| |
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| T |
1137176 |
ccagcacc |
1137183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 273 - 350
Target Start/End: Original strand, 1137266 - 1137343
Alignment:
| Q |
273 |
cctcctccttttcttatggtaacagatagttcatgtttgtgttcattactttccatcatcgcaactctgtggttcaac |
350 |
Q |
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| T |
1137266 |
cctcctccttttcttatggtaacagatagttcatgtttgtgttcattactttccatcatcgcaactctgtggttcaac |
1137343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 1181267 - 1181336
Alignment:
| Q |
104 |
ccaaaagctcaaacacaaaatcaatgttgagacacaaacgtaaggccctgcagataatgatgatgcagaa |
173 |
Q |
| |
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| T |
1181267 |
ccaaaagctcaaacacaaaatcaaagttgagacacaaaaatgaggccatgcagataatgttgttgcagaa |
1181336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 173
Target Start/End: Original strand, 1133436 - 1133551
Alignment:
| Q |
58 |
cataacatgatactaaactagtggaagtgaaacaatatgattataaccaaaagctcaaacacaaaatcaatgttgagacacaaacgtaaggccctgcaga |
157 |
Q |
| |
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|||||||||||||| ||||| |||||||||||||| | |||| | ||||||| | | ||| ||||| |||||||||| ||||| |||| ||||||| | |
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| T |
1133436 |
cataacatgatacttaactactggaagtgaaacaaggtaattaaagccaaaagattacacataaaataaatgttgagaaacaaaaataagtccctgcata |
1133535 |
T |
|
| Q |
158 |
taatgatgatgcagaa |
173 |
Q |
| |
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||||||| ||||||| |
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| T |
1133536 |
aaatgatgctgcagaa |
1133551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 64 - 173
Target Start/End: Original strand, 1171978 - 1172088
Alignment:
| Q |
64 |
atgatactaaactagtggaagtgaaacaa-tatgattataaccaaaagctcaaacacaaaatcaatgttgagacacaaacgtaaggccctgcagataatg |
162 |
Q |
| |
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|||| ||||||||| | |||||||||||| | || ||| | |||||| |||||||||||||||||||| ||||||| || | ||||| ||||||||||| |
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| T |
1171978 |
atgaaactaaactactagaagtgaaacaaatgtgtttaaagccaaaaactcaaacacaaaatcaatgtggagacactaaaatgaggccatgcagataatg |
1172077 |
T |
|
| Q |
163 |
atgatgcagaa |
173 |
Q |
| |
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|| ||||||| |
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| T |
1172078 |
ttgttgcagaa |
1172088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 1148464 - 1148533
Alignment:
| Q |
104 |
ccaaaagctcaaacacaaaatcaatgttgagacacaaacgtaaggccctgcagataatgatgatgcagaa |
173 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||| | |||| |||||||||||| || ||||||| |
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| T |
1148464 |
ccaaaagctcatacataaaatcaatgttgagacacaaaaatgaggcactgcagataatgttgttgcagaa |
1148533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 142
Target Start/End: Original strand, 1160039 - 1160120
Alignment:
| Q |
61 |
aacatgatactaaactagtggaagtgaaacaatatgattataaccaaaagctcaaacacaaaatcaatgttgagacacaaac |
142 |
Q |
| |
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||||||||||| || |||||||||| |||||| ||||||| | | |||| |||||||| ||||| ||||||| ||||||||| |
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| T |
1160039 |
aacatgatacttaattagtggaagtaaaacaacatgattaaagcaaaaaactcaaacataaaataaatgttgggacacaaac |
1160120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 73 - 173
Target Start/End: Original strand, 1164600 - 1164700
Alignment:
| Q |
73 |
aactagtggaagtgaaacaatatgattataaccaaaagctcaaacacaaaatcaatgttgagacacaaacgtaaggccctgcagataatgatgatgcaga |
172 |
Q |
| |
|
|||| ||||||||||||| || || || | ||||||||||| ||| |||||||||||||| ||||||| | ||||||| | ||||||| ||||||||| |
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| T |
1164600 |
aacttgtggaagtgaaaccatgtgtctaaagccaaaagctcatacataaaatcaatgttgatacacaaatatgaggccctcccgataatgttgatgcaga |
1164699 |
T |
|
| Q |
173 |
a |
173 |
Q |
| |
|
| |
|
|
| T |
1164700 |
a |
1164700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 319
Target Start/End: Original strand, 1160307 - 1160354
Alignment:
| Q |
272 |
tcctcctccttttcttatggtaacagatagttcatgtttgtgttcatt |
319 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||| |||| |
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| T |
1160307 |
tcctcctccctttcttatagtaacagatagttcatgtttgtgtgcatt |
1160354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 320
Target Start/End: Original strand, 1133696 - 1133740
Alignment:
| Q |
276 |
cctccttttcttatggtaacagatagttcatgtttgtgttcatta |
320 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
1133696 |
cctccttttcttacagtaacagatagttcatgtttgtgctcatta |
1133740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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