View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1900_low_17 (Length: 365)
Name: NF1900_low_17
Description: NF1900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1900_low_17 |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 20479 - 20735
Alignment:
| Q |
1 |
ctacaaaaataaaccttcaatttattctcctcttcctcttcttcatcatcaccagactcgtcttcactcgtagaactaaaaccacttttacttgctttcc |
100 |
Q |
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| T |
20479 |
ctacaaaaataaaccttcaatttcttctcctcttcctcttcttcatcatcaccagactcgtcttcactcgtagaactaaaaccacttttacttgctttcc |
20578 |
T |
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| Q |
101 |
tcttcgacgatccactactaccctcgtcttcactctcatactcttcaagtaaaaactcctcttcattatcacccacttcatcaattttcttcttcaaatt |
200 |
Q |
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| T |
20579 |
tcttcgacgctccactactaccctcgtcttcactctcatactcttcaagtaaaaactcctcttcattatcacccacttcatcaattttcttcttcaaatt |
20678 |
T |
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| Q |
201 |
cccattcttattacttttttcataatcattatcagattttcctaacagagacacaaa |
257 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
20679 |
cccactcttattacttttttcataatcattatcaaattttcctaacacagacacaaa |
20735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 293 - 360
Target Start/End: Original strand, 20771 - 20838
Alignment:
| Q |
293 |
gatgattattgttgacaacaaaatctctcatccaatcaggttcatcatctgaaccttgattctcattc |
360 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20771 |
gatgattattgttgaccacaaaatctctcatccaatcaggttcatcatctgaaccttgattctcattc |
20838 |
T |
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