View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1900_low_18 (Length: 342)
Name: NF1900_low_18
Description: NF1900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1900_low_18 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 11 - 342
Target Start/End: Original strand, 10366976 - 10367307
Alignment:
| Q |
11 |
cacagaccctaagtaatttagtttaattttccatttttatttctagttttcttgcttgtacaccacttttgaataggtactataaataatannnnnnnga |
110 |
Q |
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| T |
10366976 |
cacagaccctaagtaatttagtttaattttccatttttatttctagttttcttgcttgtacaccacttttgaataggtactataaataatatttttttga |
10367075 |
T |
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| Q |
111 |
gaaatgaaagtatataattatgatttctgttgactgatattgatagtttgagtttcaatgtgtcaaaatgtagtgtcatgattcaggaatgccactagag |
210 |
Q |
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| T |
10367076 |
gaaatgaaagtatataattatgatttctgttgactgatattgatagtttgagtttcaatgtgtcaaaatgtagtgtcaggattcaggaatgccactagag |
10367175 |
T |
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| Q |
211 |
atgggaaagaataaacaacctacagaatcaagtgttcgtgaccccgaaaaaagagaagaaacctctcttgaatgtttttccccgtttggctttgggatga |
310 |
Q |
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| T |
10367176 |
atgggaaagaataaacaacctacggaatcaagtgttcgtgaccctgaaaaaagagaagaaacttctgttaaatgtttttccccgtttggcttcggggtga |
10367275 |
T |
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| Q |
311 |
aggagcggttttggaagaggcaacacaaccca |
342 |
Q |
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| T |
10367276 |
aggagtggttttggaagaggcaacacaaccca |
10367307 |
T |
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