View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1900_low_2 (Length: 767)
Name: NF1900_low_2
Description: NF1900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1900_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 521; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 15 - 646
Target Start/End: Complemental strand, 17820848 - 17820230
Alignment:
| Q |
15 |
agctttaacatcgtgtcccaaattctgttcatggacaagtccattagttgttcacagtcactcaaagcaatttcttctctagggctgttaattcggcgtt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17820848 |
agctttaacatcgtgtcccaaattctgttcatggacaagtccattagttgttcacagtcactcaaagcaatttcttctctagggctgttaattcggcgtt |
17820749 |
T |
|
| Q |
115 |
tgataacattggctgtgtccatagcattttgaatgtgtgtggtggacttggttaataaggacaagagtacatgcaagttttggtcttttgtcgtgaccaa |
214 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17820748 |
tgataacactggctgtgtccatagcattttgaatgtgtgtggtggactttgttaataaggacaagagtacatgcaagttttggtcttttgtcgtgaccaa |
17820649 |
T |
|
| Q |
215 |
agttggaatgtgagatacttccgatacatgagctaagcaagattttgtatcaacagcatgttcacagtaaacattctgaactgtggtgaggtgaaaaaat |
314 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17820648 |
agttggaacgtgagatacttcggatacatgagctaagcaagattttgtatcaacagcatgttcacagtaaacattctgaactgtggtgaggtgaaaaaat |
17820549 |
T |
|
| Q |
315 |
gagattggtttcttgagatgggtagaaattagggctgatgagcttatgatagcaactaaagagaggattaaccaaaatgttttgggaaggaattttctag |
414 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
17820548 |
gagattggtttcttgagatgagtagaaattagggctgatgagattatgatagcaactaaagagaggattaaccaaaatgtttttggaagggattttctag |
17820449 |
T |
|
| Q |
415 |
gcttgtctagcaaagattgttgattagccatagtgataagtagctactagtggttgctcactatgatatttgtttacataatcatccttatatagaccnn |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17820448 |
gcttgtctagcaaagattgttgattagccatagtgataagtagctactagtggttgctcactatgatatttgtttacataatcatccttatatagacca- |
17820350 |
T |
|
| Q |
515 |
nnnnnnnnttatattttgtagaatttaatacaaataagagaaattccatgtggaagacattgattaattgattaatcagcattaaagtcgcagctaggag |
614 |
Q |
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|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
17820349 |
------------attttgtagaattttatacaaataagagaaattccaagtggaagacattgattaattgattaatttgcattaaagtggcagctaggag |
17820262 |
T |
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| Q |
615 |
aggagcatgtgggagactaatagatccatctt |
646 |
Q |
| |
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|||| || |||||||||||||||| ||||||| |
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| T |
17820261 |
aggaacaagtgggagactaatagagccatctt |
17820230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 29 - 429
Target Start/End: Complemental strand, 17807059 - 17806662
Alignment:
| Q |
29 |
gtcccaaattctgttcatggacaagtccattagttgttcacagtcactcaaagcaatttcttctctagggctgttaattcggcgtttgataacattggct |
128 |
Q |
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| T |
17807059 |
gtcccaaactctttccatggacaagttcattagtttttcacagacattcaaagcattttcttctctagggctgttaattcggcgtttgataacattagcc |
17806960 |
T |
|
| Q |
129 |
gtgtccatagcattttgaatgtgtgtggtggacttggttaataaggacaagagtacatgcaagttttggtcttttgtcgtgaccaaagttggaatgtgag |
228 |
Q |
| |
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|||||||| || ||| |||||||||||||||| |||||||| || || | |||| | ||| || ||||||||||| || |||| |||| | ||| |
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| T |
17806959 |
gtgtccatggcctttcgaatgtgtgtggtggatttggttaacaacgatatgagtgtactcaatttgtggtcttttgtgttgtccaaggttgaaccttgaa |
17806860 |
T |
|
| Q |
229 |
atacttccgatacatgagctaagcaagattttgtatcaacagcatgttcacagtaaacattctgaactgtggtgaggtgaaaaaatgagattggtttctt |
328 |
Q |
| |
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||| || | |||||||| |||||| || ||||||||||| |||||||||| | ||||| || ||| || || ||| |||| ||||| ||||| || |
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| T |
17806859 |
ctacctcagctacatgagttaagcatgagtttgtatcaactgcatgttcac---acacattaggagctgaggagaagtggaaaatggagatgggtttgtt |
17806763 |
T |
|
| Q |
329 |
gagatgggtagaaattagggctgatgagcttatgatagcaactaaagagaggattaaccaaaatgttttgggaaggaattttctaggcttgtctagcaaa |
428 |
Q |
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| T |
17806762 |
cagatgagaaataataagggctgatgagcttatgatagcagctaaagagagaactaaccaaaatgttttgggaatggattttctaggcttgtgtagcaaa |
17806663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 29 - 452
Target Start/End: Complemental strand, 17776367 - 17775947
Alignment:
| Q |
29 |
gtcccaaattctgttcatggacaagtccattagttgttcacagtcactcaaagcaatttcttctctagggctgttaattcggcgtttgataacattggct |
128 |
Q |
| |
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|||||||| ||| | ||||||||| ||||||| || ||||||||| ||||||||||||| ||||||||||| |||| |||||||||||| ||||| || |
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| T |
17776367 |
gtcccaaactctatccatggacaaatccattaattcctcacagtcattcaaagcaatttcctctctagggctattaactcggcgtttgatcacattagcc |
17776268 |
T |
|
| Q |
129 |
gtgtccatagcattttgaatgtgtgtggtggacttggttaataaggacaagagtacatgcaagttttggtcttttgtcgtgaccaaagttggaatgtgag |
228 |
Q |
| |
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|||||||| || ||| ||||||||| |||||| ||||||||||| || | |||| | ||| || |||||||| || || ||| || | | ||| |
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|
| T |
17776267 |
gtgtccattgcctttcgaatgtgtgcggtggatttggttaataacgatacgagtgtactcaatttgtggtctttggtattggacaaggtagaaccttgaa |
17776168 |
T |
|
| Q |
229 |
atacttccgatacatgagctaagcaagattttgtatcaacagcatgttcacagtaaacattctgaactgtggtgaggtgaaaaaatgagattggtttctt |
328 |
Q |
| |
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||||| |||||||||| |||||| ||||||||||||| |||||| ||||| | ||| || ||| || ||| | || || ||||| ||||| || |
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| T |
17776167 |
caacttctgatacatgagttaagcatgattttgtatcaagagcatgctcacat---agattaggagctgaggagagattgaagaaggagataggtttatt |
17776071 |
T |
|
| Q |
329 |
gagatgggtagaaattagggctgatgagcttatgatagcaactaaagagaggattaaccaaaatgttttgggaaggaattttctaggcttgtctagcaaa |
428 |
Q |
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||||| | | ||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||| | ||||||| ||||||||||||||| |
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| T |
17776070 |
tagatgagaaataataagggctgatgaacttatgatagcaactaaagagaggactaaccaaaatgtttttggaatggattttcttggcttgtctagcaaa |
17775971 |
T |
|
| Q |
429 |
gattgttgattagccatagtgata |
452 |
Q |
| |
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|||||||| |||||||| ||||| |
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|
| T |
17775970 |
gattgttggatagccatactgata |
17775947 |
T |
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