View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1900_low_20 (Length: 312)

Name: NF1900_low_20
Description: NF1900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1900_low_20
NF1900_low_20
[»] chr6 (5 HSPs)
chr6 (1-300)||(33673653-33673949)
chr6 (4-118)||(33685031-33685143)
chr6 (4-122)||(33663225-33663345)
chr6 (4-103)||(33692257-33692355)
chr6 (106-176)||(33663141-33663211)
[»] scaffold0016 (2 HSPs)
scaffold0016 (4-150)||(89571-89715)
scaffold0016 (13-90)||(110738-110814)
[»] chr1 (2 HSPs)
chr1 (187-300)||(20291138-20291251)
chr1 (217-265)||(47527937-47527985)
[»] chr2 (1 HSPs)
chr2 (182-265)||(16427597-16427679)
[»] chr5 (2 HSPs)
chr5 (179-265)||(3261703-3261789)
chr5 (226-266)||(6237652-6237692)
[»] chr3 (2 HSPs)
chr3 (217-265)||(51291720-51291768)
chr3 (182-265)||(47955218-47955301)


Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 33673949 - 33673653
Alignment:
Q  1 aatatggagagttgttggtggtgcttatgatgttgctctttttgtaattgaatagtgtttaattcacactatggttttggagctatgtaaaactctgtct 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  33673949 aatatggagaggtgttggtggtgcttatgatgttgctctttttgtaat-gaatagtgtttaattcacactatggttttggagctatgtaaaact--gtct 33673853  T
Q  101 tttgtatatatcatatatgtatgtttttctattttctggtgttaatagtataaaagtttaatttccatcggttattattattagggtaaattacactaac 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  33673852 tttgtatatatcatatatgtatgtttttctattttccggtgttaatagtataaaagtttaatttccattggttattattattaggataaattacactaac 33673753  T
Q  201 ctccctcaaaattttcttaaatgaaacaaacagcccctctaattttataatagacattaacctcctcggaagtctcataatttgacagatacctcccttt 300  Q
    |||||||  | |||||||||||||||||||||  |||||||||||||||||||||||||||||||||  ||||||||||||| || ||||||||||||||    
T  33673752 ctccctcgtagttttcttaaatgaaacaaacactccctctaattttataatagacattaacctcctccaaagtctcataattagaaagatacctcccttt 33673653  T

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Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 33685143 - 33685031
Alignment:
Q  4 atggagagttgttggtggtgcttatgatgttgctctttttgtaattgaatagtgtttaattcacactatggttttggagctatgtaaaactctgtctttt 103  Q
    |||||||| ||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||  |||||| ||    
T  33685143 atggagaggtgttggtggtgcttatgatgttggtctttttgtatttgaatagtgttaaattcacactatggttttggagctatgaaaaa--ctgtctctt 33685046  T
Q  104 gtatatatcatatat 118  Q
    |||||||||||||||    
T  33685045 gtatatatcatatat 33685031  T

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Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 33663345 - 33663225
Alignment:
Q  4 atggagagttgttggtggtgcttatgatgttgctctttttgtaattgaatagtgtttaattcacac----tatggttttggagctatgtaaaactctgtc 99  Q
    |||||||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||    |||||||||||| || |||||||  |||||    
T  33663345 atggagaggtgttggtggtgcttatgatgttg-tctttatgtaattgattagtgtttaattcacactatatatggttttggatctctgtaaaa--ctgtc 33663249  T
Q  100 ttttgtata-tatcatatatgtat 122  Q
    ||||||| | ||||||||||||||    
T  33663248 ttttgtacattatcatatatgtat 33663225  T

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Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 33692355 - 33692257
Alignment:
Q  4 atggagagttgttggtggtgcttatgatgttgctctttttgtaattgaatagtgtttaattcacactatggttttggagctatgtaaaactctgtctttt 103  Q
    |||||||| || |||||||||||||| ||||| |||||||||||||||| |||||| || ||||| ||||||||||||||||||||| ||| ||||||||    
T  33692355 atggagaggtgatggtggtgcttatggtgttggtctttttgtaattgaacagtgttaaaatcacattatggttttggagctatgtaatact-tgtctttt 33692257  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 33663211 - 33663141
Alignment:
Q  106 atatatcatatatgtatgtttttctattttctggtgttaatagtataaaagtttaatttccatcggttatt 176  Q
    ||||||||||||||||||||||| |||||||| ||||| |||||| ||| |||||| || |||||||||||    
T  33663211 atatatcatatatgtatgtttttatattttcttgtgttgatagtaaaaaggtttaactttcatcggttatt 33663141  T

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Target: scaffold0016 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 4 - 150
Target Start/End: Original strand, 89571 - 89715
Alignment:
Q  4 atggagagttgttggtggtgcttatgatgttgctctttttgtaattgaatagtgtttaattcacactatggttttggagctatgtaaaactctgtct-tt 102  Q
    |||||||| ||||||||||||||||| ||||| | | ||||||||| |||||||||||| ||||| ||||||||||||||||| | ||  | ||||| ||    
T  89571 atggagaggtgttggtggtgcttatggtgttggtttgtttgtaattaaatagtgtttaaatcacattatggttttggagctat-tgaatatttgtctctt 89669  T
Q  103 tgtatatatcatatatgtatgtttttctattttctggtgttaatagta 150  Q
    ||||||||||   |||||||||||||| ||||||| ||||| ||||||    
T  89670 tgtatatatc--ttatgtatgtttttccattttcttgtgttgatagta 89715  T

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Target: scaffold0016; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 110814 - 110738
Alignment:
Q  13 tgttggtggtgcttatgatgttgctctttttgtaattgaatagtgtttaattcacactatggttttggagctatgtaa 90  Q
    ||||||||||||||||| ||||  |||||| ||||||||||||||||||| |  ||||||||||||| |||| |||||    
T  110814 tgttggtggtgcttatggtgttagtctttt-gtaattgaatagtgtttaaatttcactatggttttgtagctgtgtaa 110738  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 187 - 300
Target Start/End: Original strand, 20291138 - 20291251
Alignment:
Q  187 taaattacactaacctccctcaaaattttcttaaatgaaacaaacagcccctctaattttataatagacattaacctcctcggaagtctcataatttgac 286  Q
    ||||| |||||||||||||   |  ||||||||||| | ||||||| |||||||| |||||||||||||||||||||||||  |||| ||||||||  ||    
T  20291138 taaataacactaacctcccctgaggttttcttaaataacacaaacaccccctctagttttataatagacattaacctcctccaaagtttcataattaaac 20291237  T
Q  287 agatacctcccttt 300  Q
    |||||| |||||||    
T  20291238 agatacatcccttt 20291251  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 47527985 - 47527937
Alignment:
Q  217 ttaaatgaaacaaacagcccctctaattttataatagacattaacctcc 265  Q
    |||||||| ||  ||| ||||||||||||||||||||||||||||||||    
T  47527985 ttaaatgacactgacaccccctctaattttataatagacattaacctcc 47527937  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 265
Target Start/End: Complemental strand, 16427679 - 16427597
Alignment:
Q  182 tagggtaaattacactaacctccctcaaaattttcttaaatgaaacaaacagcccctctaattttataatagacattaacctcc 265  Q
    |||||||||||||||| |||||| | ||||||||||||||| | || |||| |||||||| ||||  |||| ||||||||||||    
T  16427679 tagggtaaattacactcacctcctttaaaattttcttaaataacactaaca-cccctctagttttgaaataaacattaacctcc 16427597  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 3261703 - 3261789
Alignment:
Q  179 tattagggtaaattacactaacctccctcaaaattttcttaaatgaaacaaacagcccctctaattttataatagacattaacctcc 265  Q
    |||||||| ||||||||||| |||||||  || || | |||||| | ||||||  |||||||||||||||||||||||  |||||||    
T  3261703 tattagggaaaattacactagcctcccttgaagttcttttaaataacacaaactccccctctaattttataatagacaaaaacctcc 3261789  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 6237692 - 6237652
Alignment:
Q  226 acaaacagcccctctaattttataatagacattaacctcct 266  Q
    ||||||| |||||||||||||| |||||||| |||||||||    
T  6237692 acaaacatcccctctaattttaaaatagacactaacctcct 6237652  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 51291720 - 51291768
Alignment:
Q  217 ttaaatgaaacaaacagcccctctaattttataatagacattaacctcc 265  Q
    |||||||  ||||||| |||||||||||||| |||||||||||||||||    
T  51291720 ttaaatggcacaaacaccccctctaattttaaaatagacattaacctcc 51291768  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 265
Target Start/End: Original strand, 47955218 - 47955301
Alignment:
Q  182 tagggtaaattacactaacctccctcaaaattttcttaaatgaaacaaacagcccctctaattttataatagacattaacctcc 265  Q
    |||||||||||||||| ||||||||  || |||||||||||   || |||| |||||||| ||||  |||| ||||||||||||    
T  47955218 tagggtaaattacactcacctcccttgaagttttcttaaatagcactaacaccccctctagttttgaaataaacattaacctcc 47955301  T

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