View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1900_low_21 (Length: 309)
Name: NF1900_low_21
Description: NF1900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1900_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 35420459 - 35420740
Alignment:
| Q |
18 |
caatttgtttggaggagttgcacaacgaatcgcagtcagaactctttcatacaaaatgctctcatatttttcataaagagtgtattgctcagttgatcta |
117 |
Q |
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| T |
35420459 |
caatttgtttggaggagttgcacaacgaatcgcagtcagaactctttcatacaaaatgctctcatatttttcataaagagtgtattgcccagttgatcta |
35420558 |
T |
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| Q |
118 |
tggatgcatcaatcgttcgactccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaatatgcatgcattaattgaagtccc |
217 |
Q |
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| T |
35420559 |
tggatgcatcaatcgttcaactccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaatatgcatgcattaattgaagtccc |
35420658 |
T |
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| Q |
218 |
ttgttcattgtttcaggtttattgggtctctaatggtgtttgtttttgtgggtttattgttgtaaggtgtggcaggtctgtg |
299 |
Q |
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| T |
35420659 |
ttgttcattgtttcaggtgtattgggtctctaatggtgtttgtttttgtgggtttattgttgtaaggtgtggcaggtctgtg |
35420740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 35429598 - 35429879
Alignment:
| Q |
18 |
caatttgtttggaggagttgcacaacgaatcgcagtcagaactctttcatacaaaatgctctcatatttttcataaagagtgtattgctcagttgatcta |
117 |
Q |
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| T |
35429598 |
caatttgtttggaggagttgcacaacgaatcgcagtcaaaactctttcatacaaaatgctctcatgtttttcataaagagtgtattgcccagttgatcta |
35429697 |
T |
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| Q |
118 |
tggatgcatcaatcgttcgactccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaatatgcatgcattaattgaagtccc |
217 |
Q |
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| T |
35429698 |
tggatgcatcaatcgttcgactccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaatatgcatgcattaattgaagtccc |
35429797 |
T |
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| Q |
218 |
ttgttcattgtttcaggtttattgggtctctaatggtgtttgtttttgtgggtttattgttgtaaggtgtggcaggtctgtg |
299 |
Q |
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| T |
35429798 |
ttgttcattgtttcaggtgtattgggtctctaatggtgtttgtttttgtgggtttattgttgtaaggtgtggcaggtctgtg |
35429879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 35423499 - 35423543
Alignment:
| Q |
59 |
ctctttcatacaaaatgctctcatatttttcataaagagtgtatt |
103 |
Q |
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| T |
35423499 |
ctctttcatacaaaatgctctcatgtttttcatgaagagtgtatt |
35423543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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