View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1900_low_23 (Length: 300)
Name: NF1900_low_23
Description: NF1900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1900_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 25 - 283
Target Start/End: Complemental strand, 4112878 - 4112620
Alignment:
| Q |
25 |
catggatacaaacaaagtatttcttctactccaagtatacagaaaaatgatttcaagtttcaacttgacaacttaaggtaagtgttacctgctctaccaa |
124 |
Q |
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| T |
4112878 |
catggatacaaacaaagtatttcttctgctccaagtatacagaaaaatgatttcaagtttcaacttgacaacttaaggtaagtgttacctgctctaccaa |
4112779 |
T |
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| Q |
125 |
aaactcgctctcgatgaagtctgccaattgaggatcattgttacgatcagccacctattattatattcatgaaacataattcttagattgattagccatt |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4112778 |
aaactcgctctcgatgaagtctgccaattgaggatcattgttacgatcagccacctattattatattcatgaaacataattcttagattgattagccatt |
4112679 |
T |
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| Q |
225 |
tgatctcaatatgtatatataggaaacagaaatttttattgcatgaaaagagcaatatt |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4112678 |
tgatctcaatatgtatatataggaaacagaaatttttattgcatgaaaagagcaatatt |
4112620 |
T |
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