View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1900_low_30 (Length: 249)
Name: NF1900_low_30
Description: NF1900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1900_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 7422007 - 7421751
Alignment:
| Q |
1 |
tatcaaaatggttttagactgtctcaatacagccaaaaaattataaatgaattacaagtgaatgaattaaaagttgcgtttgcgtgaggaataatatttt |
100 |
Q |
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| T |
7422007 |
tatcaaaatggttttagactgtctcaaaacagccaaaaaattataaatgaattacaagtgaatgaattaaaagttgcgtttgcgtgaggaataatatttt |
7421908 |
T |
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| Q |
101 |
tacaaaattgaaactatgtgggagccatacttttaaatttttactatactgcgtgtgcatt--------ttttatgacg---------aactagagaaag |
183 |
Q |
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| T |
7421907 |
tacaaaattgaaactatgtgggagccatacttttaaatttttactatactgcgtgtgcattctttattcttttatgacgattgtggacaactagagaaag |
7421808 |
T |
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| Q |
184 |
atagtaatataaggtttgacataggaattaaatttgggtttgtgtgtagagaattat |
240 |
Q |
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| T |
7421807 |
atagtgatataaggtttgacataggaattaaatttgggtttgtgtgtagagaattat |
7421751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 56 - 146
Target Start/End: Complemental strand, 14203175 - 14203086
Alignment:
| Q |
56 |
aagtgaatgaattaaaagttgcgtttgcgtgaggaataatatttttacaaaattgaaactatgtgggagccatacttttaaatttttacta |
146 |
Q |
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| T |
14203175 |
aagtgaattaattaaa-gttgggtttacgtgaggaatattatttttacaaaattgaaactatgtgggagccatgctattaaatttttacta |
14203086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 13563776 - 13563710
Alignment:
| Q |
56 |
aagtgaatgaattaaaagttgcgtttgcgtgaggaataatatttttacaaaattgaaactatgtggga |
123 |
Q |
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| T |
13563776 |
aagtgaatggattaaa-gttgggtttgcgtgaggaatattatttttacaaaattgaaactatgtggga |
13563710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 147
Target Start/End: Complemental strand, 13571036 - 13570976
Alignment:
| Q |
88 |
ggaataatatttttacaaa-attgaaactatgtgggagccatacttttaaatttttactat |
147 |
Q |
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| T |
13571036 |
ggaatattagttttacaaatattgaaactatgtgggaaccatattattaaattttcactat |
13570976 |
T |
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