View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1900_low_32 (Length: 246)
Name: NF1900_low_32
Description: NF1900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1900_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 718569 - 718332
Alignment:
| Q |
1 |
tgatgcaacaagcaaaggttccaaatcccacatgtcttcaactatgatgagtatagagtcaaatatctcactgcaaaacatgtatgcagtatgcatgttc |
100 |
Q |
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| T |
718569 |
tgatgcaacaagcaaaggttccaaatcccacatgtcttcaactatgatgagtatagagtcaaatatctcactgcaaaacatgtatgcagtatgcatgttc |
718470 |
T |
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| Q |
101 |
atagatacaattagtggtcacaaaaaatgaattttatatatccatttagtgaggacaaaagctgctgacatatcttttccattgactctcatcttagcat |
200 |
Q |
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| T |
718469 |
atagatacaattagtggtcacaaaaaacgaattttatatatccatttagtgaggacaaaagctgctgacatatcttttccattgactctcatcttagcat |
718370 |
T |
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| Q |
201 |
tttggatttatgtgcctcaatcttcatgtacccttctt |
238 |
Q |
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| T |
718369 |
tttggatttatgtgcctcaatcttcatgtacccttctt |
718332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 5 - 246
Target Start/End: Original strand, 775154 - 775395
Alignment:
| Q |
5 |
gcaacaagcaaaggttccaaatcccacatgtcttcaactatgatgagtatagagtcaaatatctcactgcaaaacatgtatgcagtatgcatgttcatag |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
775154 |
gcaacaagcaaaggttccaaatcccacatgtcttcaactatgatgagtatagagtcaaatatctcactgcaaaacatgtatgcagtatgcatgttcgtag |
775253 |
T |
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| Q |
105 |
atacaattagtggtcacaaaaaatgaattttatatatccatttagtgaggacaaaagctgctgacatatcttttccattgactctcatcttagcattttg |
204 |
Q |
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| T |
775254 |
atacaattagtggtcacaaaaaatgaattttatatatccatttagtgaggacaaaagctgctgacatatcttttccattgactctcatcttagcattttg |
775353 |
T |
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| Q |
205 |
gatttatgtgcctcaatcttcatgtacccttcttatattctt |
246 |
Q |
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| T |
775354 |
gatttatgtgcctcaatcttcatgtacccttcttgtattctt |
775395 |
T |
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