View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1900_low_33 (Length: 245)
Name: NF1900_low_33
Description: NF1900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1900_low_33 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 39 - 245
Target Start/End: Complemental strand, 10367500 - 10367294
Alignment:
| Q |
39 |
ttatttgaaggattctctcagtggtaaggaaggaacttcaattcttgcaaacaagcctaacattcttgagaccttcgaatggaagacgatccaaacacaa |
138 |
Q |
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| T |
10367500 |
ttatttgaaggattctctcagtggtaaggaaggaactccaattcttgcaaacaagcctaacattcttgagaccttcgaatggaagacgatccaaacacaa |
10367401 |
T |
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| Q |
139 |
ttcaagaatgtcatcaggaagaagaaagagtccagactctacttcaacgcattccttagtgtagatttcatgcactttttcaatacatttctttgggttg |
238 |
Q |
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| T |
10367400 |
ttcaagaatgtcatcaggaagaagaaagagtccagactctacttcaacgcattcctttgtgtagatttcatgcactttttcaatacatttctttgggttg |
10367301 |
T |
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| Q |
239 |
tgttgcc |
245 |
Q |
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| T |
10367300 |
tgttgcc |
10367294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 10379047 - 10378862
Alignment:
| Q |
17 |
agattttggcatctagtatcctttatttgaaggattctctcagtggtaaggaaggaacttcaattcttgcaaacaagcctaacattcttgagaccttcga |
116 |
Q |
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| T |
10379047 |
agattttggcatctagtatcctttatttgaaggattctctcggtagtaaggaaggaactccaattcttgcaagcaagcctaacattcttgagactttcaa |
10378948 |
T |
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| Q |
117 |
atggaagacgatccaaacacaattcaagaatgtcatcaggaagaagaaagagtccagactctacttcaacgcattccttagtgtag |
202 |
Q |
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| T |
10378947 |
atggaagacaattcaaacacaattcaagaatgtcatcaggaagaagaaagatttcggactgtacttcaacacattccttagtgtag |
10378862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 185
Target Start/End: Complemental strand, 43657687 - 43657570
Alignment:
| Q |
68 |
aaggaacttcaattcttgcaaacaagcctaacattcttgagaccttcgaatggaagacgatccaaacacaattcaagaatgtcatcaggaagaagaaaga |
167 |
Q |
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|||||||| || || ||||| ||||||||| |||| | ||||| |||| ||| || |||||||||||||| ||||||||| |||| ||||||||||||| |
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| T |
43657687 |
aaggaactccattttttgcacacaagcctagcattatcgagactttcgcatgcaacacgatccaaacacatttcaagaataccatcgggaagaagaaaga |
43657588 |
T |
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| Q |
168 |
gtccagactctacttcaa |
185 |
Q |
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| T |
43657587 |
tttcggactttacttcaa |
43657570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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