View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1900_low_41 (Length: 229)
Name: NF1900_low_41
Description: NF1900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1900_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 17111704 - 17111927
Alignment:
| Q |
1 |
atcctctcatattatcctaaacattaatattcttatatagcaatattttatctcaagtaaaaatatttcattatagtcaacttaagtgaatcctgtatct |
100 |
Q |
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| T |
17111704 |
atcctctcatattatcctaaacattaatattcttatatagcaatattttatctcaagtaaaaatatttcattatattcaacttaagtgaatcctgtatct |
17111803 |
T |
|
| Q |
101 |
ttaggttatatttacctcacggtcgaactttggattatcagagctcttttttcctagaaattgaagggttaactnnnnnnnncctttatcacaaatgttt |
200 |
Q |
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| T |
17111804 |
ttaggttatatttacctcacgatcgaactttggattatcagagctcttttttcctaaaaattgaagggttaac-aaaaaaaacctttatcacaaatgttt |
17111902 |
T |
|
| Q |
201 |
tcttgatccttatcttctcaactgc |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
17111903 |
tcttgatccttatcttctcaactgc |
17111927 |
T |
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