View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1900_low_5 (Length: 518)
Name: NF1900_low_5
Description: NF1900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1900_low_5 |
 | |
|
| [»] scaffold0070 (1 HSPs) |
| | |
|
| [»] scaffold0830 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 27)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 19 - 509
Target Start/End: Complemental strand, 24913246 - 24912753
Alignment:
| Q |
19 |
ttcttgtgaagatctccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtactagtt |
118 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24913246 |
ttcttgtgaagatttccattagcataatcccatagctgtacacatctcctttcacagaaacaattcccttagatccatactctgcaagttagtactagtt |
24913147 |
T |
|
| Q |
119 |
attactatttataaaatattcttaaaaataaatcttagacacattaattactaatataacatgttgattactgatgtgtgtgtcgtagannnnnnnnn-- |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
24913146 |
attactatttataaaatattcttaaaaataaagcttagacacattaattactaatataacatgttgattacagatgtttgtgtcgtagattttttttgtt |
24913047 |
T |
|
| Q |
217 |
--gttaacaaaatcaaatagattggttaggactcaaaacgcagaataaaatgttacttaaagagaagaaatgacctggtgcgaggtatccaacagtagcc |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
24913046 |
ttgttaacaaaatcaaatagattggttaggactcaaaacacagaataaaatgttacgtaaagagaagaa-tgacctggtgcaaggtatccaacagtagct |
24912948 |
T |
|
| Q |
315 |
aaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaatcactaacatgtgcaaccatattttcatccaacaagacattgg |
414 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24912947 |
aaagtctgtgtatgagttttagattgtccttcatccatgagctttgcaataccaaaatcactaacatgtgcaaccatattttcatccaacaagacattgg |
24912848 |
T |
|
| Q |
415 |
aaggctttagatcacaatgaaccacatgcattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcattatatttaacctttgc |
509 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24912847 |
aaggctttagatcacaatgaaccacaggcattgaagaaccaagatgaagatattccaatgcagatgcaacatctatcattatatttaacctttgc |
24912753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 21 - 509
Target Start/End: Original strand, 25490088 - 25490588
Alignment:
| Q |
21 |
cttgtgaagatctccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtactagttat |
120 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||| |
|
|
| T |
25490088 |
cttgtaaagatttccattagcataatcccatagctgtacacatctcctttgacagaaacaattcctttagatccatactctgcatgttaatactagttat |
25490187 |
T |
|
| Q |
121 |
tactatttataaaatattcttaaaaa--taaatcttaga-------------cacattaattactaatataacatgttgattactgatgtgtgtgtcgta |
205 |
Q |
| |
|
||| | |||| ||||||| ||||||| ||| |||||| ||||||||||||||||||||||||||||| ||| | ||||| || |
|
|
| T |
25490188 |
tacgagttatcaaatatttttaaaaaattaaggcttagatccatactgtctacacattaattactaatataacatgttgatgactaacgtgtga----ta |
25490283 |
T |
|
| Q |
206 |
gannnnnnnnngttaacaaaatcaaatagattggttaggactcaaaac--gcagaataaaatgttacttaaagagaagaaatgacctggtgcgaggtatc |
303 |
Q |
| |
|
|| ||| ||| ||||||||||||||||| ||||| ||| | ||| ||||||||| |||| | ||||||||||||||||||||||||| |
|
|
| T |
25490284 |
gatttttgtt-gttgacataatcaaatagattggttgggactgtaaatatgaagaggaaaatgttaagtaaaaaaaagaaatgacctggtgcgaggtatc |
25490382 |
T |
|
| Q |
304 |
caacagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaatcactaacatgtgcaaccatattttcatccaa |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25490383 |
caacagtagccaaagtttgtgtatgagttttagattgtccttcatccatgagcttagcaataccaaaatcactaacatgtgcaaccatattttcatccaa |
25490482 |
T |
|
| Q |
404 |
caagacattggaaggctttagatcacaatgaaccacatgcattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcattatatttaac |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25490483 |
caagacattggaaggctttagatcacaatgaaccacaggcattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcattatatttaac |
25490582 |
T |
|
| Q |
504 |
ctttgc |
509 |
Q |
| |
|
|||||| |
|
|
| T |
25490583 |
ctttgc |
25490588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 14 - 509
Target Start/End: Original strand, 25695241 - 25695751
Alignment:
| Q |
14 |
cttttttcttgtgaagatctccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtac |
113 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||| |||||||||||| |||| || |
|
|
| T |
25695241 |
ctttcttcttgtgaagatttccattagcataatcccatagctgaacacgtctcctttcacagaaacaattcctctagaaccatactctgcatgttaataa |
25695340 |
T |
|
| Q |
114 |
tagttattactatttataaa---atattcttaaaaa-taaatcttaga-------------cacattaattactaatataacatgttgattactgatgtg |
196 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||| |||| |||||| ||||| ||||||||||||||||||||||| ||| | ||| |
|
|
| T |
25695341 |
tagttactactatttataaataaatattcttaaaaaataaagcttagatccatactgtgtacacatcaattactaatataacatgttgatgactaacgtg |
25695440 |
T |
|
| Q |
197 |
tgtgtcgtagannnnnnnnngttaacaaaatcaaatagattggttaggactcaaaac--gcagaataaaatgttacttaaa-gagaagaaatgacctggt |
293 |
Q |
| |
|
|| |||| ||| ||| ||||||||||||||||| ||||| ||| | ||| ||||||||| |||| || ||||||||||||||| |
|
|
| T |
25695441 |
tga----tagatttttgtt-gttgacataatcaaatagattggttgggactgtaaatatgaagaggaaaatgttaagtaaaagaaaagaaatgacctggt |
25695535 |
T |
|
| Q |
294 |
gcgaggtatccaacagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaatcactaacatgtgcaaccatat |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25695536 |
gcgaggtatccaacagtagccaaagtttgtgtatgagttttagattgtccttcatccatcagctttgcaataccaaaatcactaacatgtgcaaccatat |
25695635 |
T |
|
| Q |
394 |
tttcatccaacaagacattggaaggctttagatcacaatgaaccacatgcattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcat |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25695636 |
tttcatccaacaagacattggaaggctttagatcacaatgaaccactggtattgaggaaccatgatggagatattccaatgcagatgcaacatctatcat |
25695735 |
T |
|
| Q |
494 |
tatatttaacctttgc |
509 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
25695736 |
tatatttaacctttgc |
25695751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 14 - 509
Target Start/End: Original strand, 25715074 - 25715584
Alignment:
| Q |
14 |
cttttttcttgtgaagatctccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtac |
113 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||| | |
|
|
| T |
25715074 |
cttttttcttgttaagatttccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcctctagaaccatactctgcatgttaagtc |
25715173 |
T |
|
| Q |
114 |
tagttattactatttataaaatattcttaaaaataaatcttaga-------------cacattaattactaatataacatgttgattactgatgtgtgtg |
200 |
Q |
| |
|
|||||||||| | |||| ||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
25715174 |
tagttattaccagttatcaaatattcttaaagttaaggcttagatccatacaatgtacacattaattactaatataacatgttgatgactaatgtgtgtt |
25715273 |
T |
|
| Q |
201 |
tcgtagannnnnnnnngttaacaaaatcaaatagattggttaggactcaaa-acgcagaataaaatgttac----ttaaagagaagaaatgacctggtgc |
295 |
Q |
| |
|
||||| ||| ||||||| | ||||||||||| ||||| ||| | | || | ||||||| | ||||||||||||||||||||||| |
|
|
| T |
25715274 |
--gtagatatttttt-gttgacaaaataatatagattggttgggactgaaacataaacaagataatgttaagaagtaaaagagaagaaatgacctggtgc |
25715370 |
T |
|
| Q |
296 |
gaggtatccaacagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaatcactaacatgtgcaaccatattt |
395 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25715371 |
aagatatccaatagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaatcgctaacatgtgcaaccatattt |
25715470 |
T |
|
| Q |
396 |
tcatccaacaagacattggaaggctttagatcacaatgaaccacatgcattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcatta |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
25715471 |
tcatccaacaagacattggaaggctttagatcacaatgaaccactggtattgaagaaccacgatggagatattccaatgcagatgcaacatctatcatta |
25715570 |
T |
|
| Q |
496 |
tatttaacctttgc |
509 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
25715571 |
tatttaacctttgc |
25715584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 508
Target Start/End: Original strand, 25685528 - 25686037
Alignment:
| Q |
14 |
cttttttcttgtgaagatctccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtac |
113 |
Q |
| |
|
|||| |||||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||| |||| | |
|
|
| T |
25685528 |
ctttcttcttgtgaaaatttccattagcataatcccatagctgtacacatctcctttgaccgaaacaattcctttagatccatactctgcatgttaagtc |
25685627 |
T |
|
| Q |
114 |
tagttattactatttataaaatattcttaaaaataaatcttaga-------------cacattaattactaatataacatgttgattactgatgtgtgtg |
200 |
Q |
| |
|
|||||||||| | |||| ||||||||||||| ||| |||||| |||| |||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
25685628 |
tagttattaccagttatcaaatattcttaaagttaatgcttagatccatacaatgtacacagtaattactaatataacatgttgataactaatgtgtgtt |
25685727 |
T |
|
| Q |
201 |
tcgtagannnnnnnnngttaacaaaatcaaatagattggttaggactcaaaacgcag-aataaaatgttac----ttaaagagaagaaatgacctggtgc |
295 |
Q |
| |
|
||||| ||| ||||||||||| ||||||||| ||||| |||| | || | ||||||| | ||||||||||||||||||||||| |
|
|
| T |
25685728 |
--gtagatatttttg-gttgacaaaatcaaacagattggttcggactgaaaaataaataagataatgttaagaagtaaaagagaagaaatgacctggtgc |
25685824 |
T |
|
| Q |
296 |
gaggtatccaacagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaatcactaacatgtgcaaccatattt |
395 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25685825 |
aagatatccaatagtagccaaagtttgtgtatgagtttgagattgtccttcatccaggagcttggcaataccaaaatcgctaacatgtgcaaccatattt |
25685924 |
T |
|
| Q |
396 |
tcatccaacaagacattggaaggctttagatcacaatgaaccacatgcattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcatta |
495 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25685925 |
tcatccaacaagacattcgaaggctttagatcgcaatgaaccacaggtattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcatta |
25686024 |
T |
|
| Q |
496 |
tatttaacctttg |
508 |
Q |
| |
|
||||||||||||| |
|
|
| T |
25686025 |
tatttaacctttg |
25686037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 14 - 508
Target Start/End: Original strand, 25322537 - 25323046
Alignment:
| Q |
14 |
cttttttcttgtgaagatctccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtac |
113 |
Q |
| |
|
|||| ||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||| | |
|
|
| T |
25322537 |
ctttcttcttgtgaagatttccattatcattatcccatagctgtacacgtctcctttgacagaaacaattcctctagaaccatactctgcatgttaagtc |
25322636 |
T |
|
| Q |
114 |
tagttattactatttataaaatattcttaaaaataaatcttaga-------------cacattaattactaatataacatgttgattactgatgtgtgtg |
200 |
Q |
| |
|
|||||||||||| |||| |||||| ||||| ||| ||||| |||||||||||||||||||||||||| || ||| | |||||| |
|
|
| T |
25322637 |
tagttattactagttatcgaatattattaaagttaaggattagatccatacaatgtacacattaattactaatataacatgtttatgactaa--tgtgtg |
25322734 |
T |
|
| Q |
201 |
tcgtagannnnnnnnngttaacaaaatcaaatagattggttaggactcaaa-acgcagaataaaatgtt----acttaaagagaagaaatgacctggtgc |
295 |
Q |
| |
|
| |||| ||| | ||||| ||||||||||||| ||||| ||| | | || | |||||| | | ||||||||||||||||||||||| |
|
|
| T |
25322735 |
ttataga-tattttttgttgaaaaaataaaatagattggttgggactgaaacataaacaagataatgttaagaagtaaaagagaagaaatgacctggtgc |
25322833 |
T |
|
| Q |
296 |
gaggtatccaacagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaatcactaacatgtgcaaccatattt |
395 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25322834 |
aagatatccaatagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagcttggcaataccaaaatcgctaacatgtgcaaccatattt |
25322933 |
T |
|
| Q |
396 |
tcatccaacaagacattggaaggctttagatcacaatgaaccacatgcattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcatta |
495 |
Q |
| |
|
| |||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25322934 |
ttatccaataagacattggaaggctttagatcacaatgaaccacaggtattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcatta |
25323033 |
T |
|
| Q |
496 |
tatttaacctttg |
508 |
Q |
| |
|
||||||||||||| |
|
|
| T |
25323034 |
tatttaacctttg |
25323046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 221 - 509
Target Start/End: Original strand, 25453079 - 25453373
Alignment:
| Q |
221 |
acaaaatcaaatagattggttaggactcaaaacgca--gaataaaatgttac----ttaaagagaagaaatgacctggtgcgaggtatccaacagtagcc |
314 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| | ||| ||||||||| | |||||||| |||||||||||||| |||||||||| |||||| |
|
|
| T |
25453079 |
acaaaatcaaatagattggttaggactgaaaacataaagaagaaaatgttatgaagtaaaagagaataaatgacctggtgcaaggtatccaatagtagct |
25453178 |
T |
|
| Q |
315 |
aaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaatcactaacatgtgcaaccatattttcatccaacaagacattgg |
414 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
25453179 |
aaagtttgtgtgtaagtttgagattgtccttcatccatgagcttggcaataccaaaatcgctaacatgtgcaaccatattttcatccaacaagacattag |
25453278 |
T |
|
| Q |
415 |
aaggctttagatcacaatgaaccacatgcattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcattatatttaacctttgc |
509 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25453279 |
aaggctttagatcacaatgaaccacaggcattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcattatatttaacctttgc |
25453373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 22 - 508
Target Start/End: Original strand, 25604526 - 25605027
Alignment:
| Q |
22 |
ttgtgaagatctccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtactagttatt |
121 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||| |||| ||||||||| |
|
|
| T |
25604526 |
ttgtaaagatttccattagcataattccatagctgtacacatctcctttgacagaaacaattcctctagaaccatactctgcatgttaagcctagttatt |
25604625 |
T |
|
| Q |
122 |
actatttataaaatattcttaaaaataaatcttaga-------------cacattaattactaatataacatgttgattactgatgtgtgtgtcgtagan |
208 |
Q |
| |
|
|||| | || ||||||||||||| ||| |||||| ||||||| ||||||||||||||||||||| ||| |||| ||| ||||| |
|
|
| T |
25604626 |
actagtaatcaaatattcttaaagttaaggcttagatccatacaatgtacacattatttactaatataacatgttgatgactaatgtttgtt--gtagat |
25604723 |
T |
|
| Q |
209 |
nnnnnnnngttaacaaaatcaaatagattggttaggactcaaa-acgcagaataaaatgttac----ttaaagagaagaaatgacctggtgcgaggtatc |
303 |
Q |
| |
|
||| ||||||| ||||||||||||| ||||| ||| | | || | ||||||| | ||||| ||||||||||||||||| || |||| |
|
|
| T |
25604724 |
gtttttt-gttgacaaaataaaatagattggttgggactgaaacataaacaagataatgttaagaagtaaaagataagaaatgacctggtgcaagatatc |
25604822 |
T |
|
| Q |
304 |
caacagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaatcactaacatgtgcaaccatattttcatccaa |
403 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||| |||||| |
|
|
| T |
25604823 |
caatagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagcttggcaataccaaaatcgctaacatgtgctaccatatttttatccaa |
25604922 |
T |
|
| Q |
404 |
caagacattggaaggctttagatcacaatgaaccacatgcattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcattatatttaac |
503 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25604923 |
taagacatttgaaggctttagatctcaatgaaccacaggtattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcattatatttaac |
25605022 |
T |
|
| Q |
504 |
ctttg |
508 |
Q |
| |
|
||||| |
|
|
| T |
25605023 |
ctttg |
25605027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 271 - 509
Target Start/End: Original strand, 25341133 - 25341371
Alignment:
| Q |
271 |
ttaaagagaagaaatgacctggtgcgaggtatccaacagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaa |
370 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25341133 |
ttaaagagaagaaatgacctggtgcaaggtatccaatagtagccaaagtttgtgtatgagttttagattgtccttcatccatgagcttggcaataccaaa |
25341232 |
T |
|
| Q |
371 |
atcactaacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaaccacatgcattgaagaaccatgatgaagatattcc |
470 |
Q |
| |
|
||| || |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| | | ||||||||||||||| ||||||||| |
|
|
| T |
25341233 |
atcgcttacatgtgcaaccatattttcatccaataagacattagaaggctttagatcgcaatgaaccactggtactgaagaaccatgatggagatattcc |
25341332 |
T |
|
| Q |
471 |
aatgcagatgcaacatctatcattatatttaacctttgc |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25341333 |
aatgcagatgcaacatctatcattatatttaacctttgc |
25341371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 273 - 509
Target Start/End: Original strand, 23258359 - 23258595
Alignment:
| Q |
273 |
aaagagaagaaatgacctggtgcgaggtatccaacagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaat |
372 |
Q |
| |
|
|||||||| |||| ||||||||| |||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23258359 |
aaagagaacaaattacctggtgcaaggtatccaagagtagctaaagtttgtgtatgagtttcagattgtccttcatccatgagctttgaaataccaaaat |
23258458 |
T |
|
| Q |
373 |
cactaacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaaccacatgcattgaagaaccatgatgaagatattccaa |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| | ||||||||||||||||| ||||||||||| |
|
|
| T |
23258459 |
cactaacatgtgcaaccatattttcatccaacaagacattagaaggttttagatcgcaatgaaccacgggtattgaagaaccatgatggagatattccaa |
23258558 |
T |
|
| Q |
473 |
tgcagatgcaacatctatcattatatttaacctttgc |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23258559 |
tgcagatgcaacatctatcattatatttaacctttgc |
23258595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 271 - 509
Target Start/End: Original strand, 25570039 - 25570277
Alignment:
| Q |
271 |
ttaaagagaagaaatgacctggtgcgaggtatccaacagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaa |
370 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||| |||||| ||||| ||||||||||||| |||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
25570039 |
ttaatgagaagaaatgacttggtgcaaggtatccaatagtagctaaagtctgtgtatgagttttagattgaccttcatccatgagcttagcaataccaaa |
25570138 |
T |
|
| Q |
371 |
atcactaacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaaccacatgcattgaagaaccatgatgaagatattcc |
470 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
25570139 |
atcactaacacgtgcaaccatattttcatccaacatgacattggagggctttagatcacagtgaaccacaggcattgaagaaccatgatgaagatatttc |
25570238 |
T |
|
| Q |
471 |
aatgcagatgcaacatctatcattatatttaacctttgc |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25570239 |
aatgcagatgcaacatctatcattatatttaacctttgc |
25570277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 277 - 508
Target Start/End: Original strand, 25800437 - 25800668
Alignment:
| Q |
277 |
agaagaaatgacctggtgcgaggtatccaacagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaatcact |
376 |
Q |
| |
|
||||||||| ||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
25800437 |
agaagaaattacctggtgcaagatatccaacagtagccaaagtttgtgtatgagttttagattgtccttcatccatgagcttggcaataccaaaatcgct |
25800536 |
T |
|
| Q |
377 |
aacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaaccacatgcattgaagaaccatgatgaagatattccaatgca |
476 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| | ||||||||||||||||| |||||||| | |||| |
|
|
| T |
25800537 |
tacatgtgcaaccatattttcatccaataagacattagaaggctttagatcgcaatgaaccactggtattgaagaaccatgatggagatattctactgca |
25800636 |
T |
|
| Q |
477 |
gatgcaacatctatcattatatttaacctttg |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
25800637 |
gatgcaacatctatcattatatttaacctttg |
25800668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 221 - 509
Target Start/End: Original strand, 25647109 - 25647403
Alignment:
| Q |
221 |
acaaaatcaaatagattggttaggactcaaaacgca--gaataaaatgttac----ttaaagagaagaaatgacctggtgcgaggtatccaacagtagcc |
314 |
Q |
| |
|
||||||||||||| |||||||| |||| |||||| | ||| ||||||||| | ||| ||||||||||||||||||| || ||||||| ||||||| |
|
|
| T |
25647109 |
acaaaatcaaataaattggttatgactgaaaacgtaaagaagaaaatgttaagaagtaaaacagaagaaatgacctggtgcaagatatccaatagtagcc |
25647208 |
T |
|
| Q |
315 |
aaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaatcactaacatgtgcaaccatattttcatccaacaagacattgg |
414 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
25647209 |
aaagtctgtgtatgagttttagattgtccttcacccatgagcttagcaataccaaaatcactaacatgtgcaaccatattttcatccaacaagacatttg |
25647308 |
T |
|
| Q |
415 |
aaggctttagatcacaatgaaccacatgcattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcattatatttaacctttgc |
509 |
Q |
| |
|
||||||||||||| || |||||||| | ||||| ||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
25647309 |
aaggctttagatctcattgaaccactggtattgatgaaccatgatggagatattccaattctgatgcaacatctatcattatatttaacctttgc |
25647403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 217 - 509
Target Start/End: Original strand, 25475754 - 25476052
Alignment:
| Q |
217 |
gttaacaaaatcaaatagattggttaggactcaaaacgca--gaataaaatgttac----ttaaagagaagaaatgacctggtgcgaggtatccaacagt |
310 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| || || | ||| |||||||||| | ||||||||||||||||||||||| | |||||||| ||| |
|
|
| T |
25475754 |
gttaacagaatcaaatagattggttgggactaaagacataaagaagaaaatgttacaaagtaaaagagaagaaatgacctggtgcaatgtatccaatagt |
25475853 |
T |
|
| Q |
311 |
agccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaatcactaacatgtgcaaccatattttcatccaacaagaca |
410 |
Q |
| |
|
|| |||||||||||||| || |||| | |||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
25475854 |
aggaaaagtttgtgtatggcatttagatcggccttcatcgatgagcttggcaataccaaaatcactaacatgtgcaaccatatttttatccaacatgaca |
25475953 |
T |
|
| Q |
411 |
ttggaaggctttagatcacaatgaaccacatgcattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcattatatttaacctttgc |
509 |
Q |
| |
|
|| |||||||||||||| |||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25475954 |
ttagaaggctttagatcgcaatgaaccacaggtattgaagaaccatgatggagatattccaatgcagatgcaacatctatcattatattcaacctttgc |
25476052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 279 - 509
Target Start/End: Complemental strand, 22900709 - 22900479
Alignment:
| Q |
279 |
aagaaatgacctggtgcgaggtatccaacagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaatcactaa |
378 |
Q |
| |
|
||||||| ||||||||| || ||||||| |||||||||||| | ||||||||||| ||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
22900709 |
aagaaattacctggtgcaagatatccaatagtagccaaagtctctgtatgagttttagattgtccttcatccatgagtttggcaataccaaaatcactaa |
22900610 |
T |
|
| Q |
379 |
catgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaaccacatgcattgaagaaccatgatgaagatattccaatgcaga |
478 |
Q |
| |
|
||||||||||||||| ||| |||| ||||||||| |||||||||||||||||| |||||| | ||||||||||||||||| ||||||||||||||| | |
|
|
| T |
22900609 |
catgtgcaaccatatcttcgtccagcaagacattactaggctttagatcacaatggaccacaggtattgaagaaccatgatggagatattccaatgcata |
22900510 |
T |
|
| Q |
479 |
tgcaacatctatcattatatttaacctttgc |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
22900509 |
tgcaacatctatcattatatttaacctttgc |
22900479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 271 - 439
Target Start/End: Complemental strand, 24875337 - 24875169
Alignment:
| Q |
271 |
ttaaagagaagaaatgacctggtgcgaggtatccaacagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaa |
370 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24875337 |
ttaaagagaagaaatgacttggtgcaaggtatccaatagtagccaaagtttgtgtatgagtttcagattgtccttcatccatgagctttgcaataccaaa |
24875238 |
T |
|
| Q |
371 |
atcactaacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaaccac |
439 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24875237 |
atcgctaacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaaccac |
24875169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 24875598 - 24875468
Alignment:
| Q |
16 |
tttttcttgtgaagatctccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtacta |
115 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| || || || |
|
|
| T |
24875598 |
tttttcttgtgaagatttccattagcataatcccatagctgtacacatctcctttgacagaaacaattcctttagatccatactctgcatgt---taata |
24875502 |
T |
|
| Q |
116 |
gttattactatttataaaatattcttaaaaataa |
149 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||| |
|
|
| T |
24875501 |
tttattactatttatcaaatattcttaaacataa |
24875468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 25340880 - 25341012
Alignment:
| Q |
14 |
cttttttcttgtgaagatctccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtac |
113 |
Q |
| |
|
|||| ||||||||||||| ||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
25340880 |
ctttcttcttgtgaagatttccattaacatgatcccatagctgtacacatctcctttgacagaaacaattcccttagatccatactctgca---tcttaa |
25340976 |
T |
|
| Q |
114 |
tagttattactatttataaaatattcttaaaaataa |
149 |
Q |
| |
|
|| |||||||||||||| ||||||||||||| |||| |
|
|
| T |
25340977 |
tatttattactatttatcaaatattcttaaacataa |
25341012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 25475156 - 25475246
Alignment:
| Q |
14 |
cttttttcttgtgaagatctccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatccatactctgca |
104 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
25475156 |
cttttttcttgttaagatttccattagcataatcccatagctgtacacatctcctttcacagaaacaattcctttagatccatactctgca |
25475246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 25800167 - 25800273
Alignment:
| Q |
14 |
cttttttcttgtgaagatctccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtac |
113 |
Q |
| |
|
|||| ||||||||||||| ||||||| ||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||| |||| ||| |
|
|
| T |
25800167 |
ctttcttcttgtgaagatttccattaacatgatcccatagctgtacacatctcctttgacggaaacaattcctttagatccatactctgcatgttaatac |
25800266 |
T |
|
| Q |
114 |
tagttat |
120 |
Q |
| |
|
||||||| |
|
|
| T |
25800267 |
tagttat |
25800273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #21
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 25452872 - 25452978
Alignment:
| Q |
14 |
cttttttcttgtgaagatctccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtac |
113 |
Q |
| |
|
|||| ||||||| ||||| ||||||| ||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||| |||| ||| |
|
|
| T |
25452872 |
ctttcttcttgtaaagatttccattaacatgatcccatagctgtacacatctcctttgacggaaacaattcctttagatccatactctgcatgttaatac |
25452971 |
T |
|
| Q |
114 |
tagttat |
120 |
Q |
| |
|
||||||| |
|
|
| T |
25452972 |
tagttat |
25452978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #22
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 25646930 - 25647031
Alignment:
| Q |
21 |
cttgtgaagatctccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtactagttat |
120 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||| ||||||| |||||||| |||||||||||||| || ||||||||||||||| |||| |||||||||| |
|
|
| T |
25646930 |
cttgtaaagatttccattagcataatcccatagttgtacacatctcctttcacagaaacaattcctttcgatccatactctgcatgttaatactagttat |
25647029 |
T |
|
| Q |
121 |
ta |
122 |
Q |
| |
|
|| |
|
|
| T |
25647030 |
ta |
25647031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #23
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 23257824 - 23257912
Alignment:
| Q |
21 |
cttgtgaagatctccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagtta |
109 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| || |||||||||||||||| | ||||||| ||||||||||||||| |||| |
|
|
| T |
23257824 |
cttgtgaagatttccattagcataatcccatagctgtatacatctcctttgacagaaatagttccctttgatccatactctgcatgtta |
23257912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #24
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 25569787 - 25569919
Alignment:
| Q |
14 |
cttttttcttgtgaagatctccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtac |
113 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||||| | |||||||| ||||||||||| ||||||| |||| |||||||| || || |
|
|
| T |
25569787 |
ctttcttcttgtgaagatttccattagcataatcccatagctgtaaatatctcctttcacagaaacaatccccttagttccacactctgcatgt---taa |
25569883 |
T |
|
| Q |
114 |
tagttattactatttataaaatattcttaaaaataa |
149 |
Q |
| |
|
|| ||| |||||| ||| ||||||||||||| |||| |
|
|
| T |
25569884 |
tatttactactatatatcaaatattcttaaatataa |
25569919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #25
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 22901319 - 22901224
Alignment:
| Q |
14 |
cttttttcttgtgaagatctccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagtta |
109 |
Q |
| |
|
|||| ||||||| ||||| |||||||||||||||||||||||||| || |||||||||| |||||||||||| |||| ||| ||||||||| |||| |
|
|
| T |
22901319 |
ctttcttcttgtaaagatttccattagcataatcccatagctgtatacatctcctttgatagaaacaattcctttagttccgtactctgcatgtta |
22901224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 192
Target Start/End: Original strand, 25453018 - 25453053
Alignment:
| Q |
157 |
acacattaattactaatataacatgttgattactga |
192 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
25453018 |
acacattaattacaaatataacatgttgattactga |
25453053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 509
Target Start/End: Complemental strand, 24875159 - 24875126
Alignment:
| Q |
476 |
agatgcaacatctatcattatatttaacctttgc |
509 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
24875159 |
agatgcagcatctatcattatatttaacctttgc |
24875126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 14 - 509
Target Start/End: Complemental strand, 17238 - 16713
Alignment:
| Q |
14 |
cttttttcttgtgaagatctccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtac |
113 |
Q |
| |
|
|||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17238 |
ctttcttcttgtaaagatttccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtat |
17139 |
T |
|
| Q |
114 |
ta-------------gt---tattactatttataaaatattcttaaaaataaatcttagac-------------acattaattactaatataacatgttg |
184 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
17138 |
tacataaattttcttgtgaatattactatttataaaatattcttaaaaataaagcttagacccataccatgtacacattaattactaatataacatgttg |
17039 |
T |
|
| Q |
185 |
attactgatgtgtgtgtcgtagannnnnnnnn--gttaacaaaatcaaatagattggttaggactcaaaacgcagaataaaatgttacttaaagagaaga |
282 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
17038 |
attactgatgtgtgtgtcgtagatttttttttttgttaacaaaatcaaatagattggttaggacttaaaactcagaataaaatgttacttaaagagaaga |
16939 |
T |
|
| Q |
283 |
aatgacctggtgcgaggtatccaacagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaatcactaacatg |
382 |
Q |
| |
|
| ||||||||||| ||||||||||||||||| ||||| ||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16938 |
a-tgacctggtgcaaggtatccaacagtagctaaagtctgtgtatgagttttagattgaccttcatccatgagcttagcaataccaaaatcactaacatg |
16840 |
T |
|
| Q |
383 |
tgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaaccacatgcattgaagaaccatgatgaagatattccaatgcagatgca |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16839 |
tgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaaccacaggcattgaagaaccatgatgaagatattccaatgcagatgca |
16740 |
T |
|
| Q |
483 |
acatctatcattatatttaacctttgc |
509 |
Q |
| |
|
|| |||||||||||||||||||||||| |
|
|
| T |
16739 |
acttctatcattatatttaacctttgc |
16713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 273 - 505
Target Start/End: Original strand, 10324008 - 10324240
Alignment:
| Q |
273 |
aaagagaagaaatgacctggtgcgaggtatccaacagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaat |
372 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10324008 |
aaagagaagaaatgacctggtgcaaggtatccaatagtagctaaagtctgtgtatgagtttttgattgtccttcatccatgagcttggcaataccaaaat |
10324107 |
T |
|
| Q |
373 |
cactaacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaaccacatgcattgaagaaccatgatgaagatattccaa |
472 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||| |
|
|
| T |
10324108 |
cgctaacatgtgcaaccatattttcatccaacaagacattagaaggctttagatcacaatgaaccacgggtattgaagaaccatgatggagatattccaa |
10324207 |
T |
|
| Q |
473 |
tgcagatgcaacatctatcattatatttaacct |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
10324208 |
tgcagatgcaacatctatcattatatttaacct |
10324240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 10323748 - 10323843
Alignment:
| Q |
14 |
cttttttcttgtgaagatctccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagtta |
109 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
10323748 |
ctttcttcttgtgaagatttccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcctttagatccatactctgcatgtta |
10323843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0830 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: scaffold0830
Description:
Target: scaffold0830; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 274 - 509
Target Start/End: Complemental strand, 4434 - 4199
Alignment:
| Q |
274 |
aagagaagaaatgacctggtgcgaggtatccaacagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaatc |
373 |
Q |
| |
|
|||| ||||||| ||||||||| |||||||| | ||| |||||||||||||||||||||| ||| |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
4434 |
aagaaaagaaattacctggtgcaaggtatccgatagttgccaaagtttgtgtatgagttttagaatgtccttcgtccatgagcttggcaataccaaaatc |
4335 |
T |
|
| Q |
374 |
actaacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaaccacatgcattgaagaaccatgatgaagatattccaat |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| | ||||||||||||||||| |||||||||||| |
|
|
| T |
4334 |
actaacatgtgcaaccatattttcatccaacaagacatttgaaggctttagatctcaatgaaccacaggtattgaagaaccatgatgtagatattccaat |
4235 |
T |
|
| Q |
474 |
gcagatgcaacatctatcattatatttaacctttgc |
509 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4234 |
gctgatgcaacatctatcattatatttaacctttgc |
4199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0830; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 4688 - 4563
Alignment:
| Q |
14 |
cttttttcttgtgaagatctccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtac |
113 |
Q |
| |
|
|||| |||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| | | ||| |
|
|
| T |
4688 |
ctttcttctggtgaagatttccattagcataatcccatagctgtacacatctcctttgacagaaacaattcctttagatccatactctgcatttaaatac |
4589 |
T |
|
| Q |
114 |
tagttattactatttataaaatattc |
139 |
Q |
| |
|
|||||||||||| ||| |||||||| |
|
|
| T |
4588 |
tagttattactagctatcaaatattc |
4563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 274 - 497
Target Start/End: Original strand, 5079906 - 5080129
Alignment:
| Q |
274 |
aagagaagaaatgacctggtgcgaggtatccaacagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaatc |
373 |
Q |
| |
|
|||||||||||| ||||||||| | || |||| ||||| ||||| || ||||||| || ||||||||| ||||||| |||||||| ||| |||||||| |
|
|
| T |
5079906 |
aagagaagaaattacctggtgcaacataaccaattgtagctaaagtctgagtatgagctttagattgtccatcatccaagagctttgaaatcccaaaatc |
5080005 |
T |
|
| Q |
374 |
actaacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaaccacatgcattgaagaaccatgatgaagatattccaat |
473 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||| |||||| | ||||||||||||||| | ||||||||||||||||||||||| |||||| |
|
|
| T |
5080006 |
actaacatgtgcaaccatattttcatccagtaacacattgctaggcttcaaatcacaatgaaccactggtattgaagaaccatgatgaagatactccaat |
5080105 |
T |
|
| Q |
474 |
gcagatgcaacatctatcattata |
497 |
Q |
| |
|
|||||||| ||||||||||||||| |
|
|
| T |
5080106 |
gcagatgccacatctatcattata |
5080129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 323 - 509
Target Start/End: Complemental strand, 5119578 - 5119392
Alignment:
| Q |
323 |
tgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaatcactaacatgtgcaaccatattttcatccaacaagacattggaaggcttt |
422 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||| | ||| |||||||||||||||||||||||||||| |||||||| ||| ||||| |||||| |
|
|
| T |
5119578 |
tgtatgagtttttgattgtccttcatccaagagcttggaaatcccaaaatcactaacatgtgcaaccatatcttcatccagcaacacattactaggcttc |
5119479 |
T |
|
| Q |
423 |
agatcacaatgaaccacatgcattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcattatatttaacctttgc |
509 |
Q |
| |
|
| ||||||||||||||| | ||||||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||| |
|
|
| T |
5119478 |
aaatcacaatgaaccactggtattgaagaaccatgatgaagatactccaatgcagatgccacatctatcattatgttcaacctttgc |
5119392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 323 - 509
Target Start/End: Complemental strand, 5102019 - 5101833
Alignment:
| Q |
323 |
tgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaatcactaacatgtgcaaccatattttcatccaacaagacattggaaggcttt |
422 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||| | ||| |||||||||||||||||||||| ||||||||||||||| || ||||| | |||||| |
|
|
| T |
5102019 |
tgtatgagtttttgattgtccttcatccaagagcttggaaatcccaaaatcactaacatgtgcaatcatattttcatccaataacacattagcaggcttc |
5101920 |
T |
|
| Q |
423 |
agatcacaatgaaccacatgcattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcattatatttaacctttgc |
509 |
Q |
| |
|
| |||||||||||||| | ||| ||||||||||||| ||||| |||||||| ||||| |||||||||||||| || ||||||||| |
|
|
| T |
5101919 |
aagtcacaatgaaccactggtattaaagaaccatgatggagatactccaatgctgatgccacatctatcattatgttcaacctttgc |
5101833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 5102545 - 5102467
Alignment:
| Q |
24 |
gtgaagatctccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatccatactctg |
102 |
Q |
| |
|
||||| || ||||||||||| ||||||||||||||||| |||||||| || |||| ||||| ||||||||||||||| |
|
|
| T |
5102545 |
gtgaacatttccattagcattatcccatagctgtacacatctcctttaactgaaatgattccgctagatccatactctg |
5102467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 5120170 - 5120092
Alignment:
| Q |
24 |
gtgaagatctccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatccatactctg |
102 |
Q |
| |
|
||||| || ||||||||||| ||||||||||||||||| |||||||| || |||| || ||| ||||||||||||||| |
|
|
| T |
5120170 |
gtgaacatttccattagcattatcccatagctgtacacatctcctttaactgaaatgatccccctagatccatactctg |
5120092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 5079742 - 5079825
Alignment:
| Q |
18 |
tttcttgtgaagatctccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatccatactct |
101 |
Q |
| |
|
|||| ||||||||| ||||||||||| || ||| |||| ||||| |||||||| || |||| | ||||||||||||||||||| |
|
|
| T |
5079742 |
tttcctgtgaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccatactct |
5079825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 7e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 339 - 509
Target Start/End: Complemental strand, 16886284 - 16886114
Alignment:
| Q |
339 |
tgtccttcatccatgagctttgcaataccaaaatcactaacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaacca |
438 |
Q |
| |
|
||||||||||||| |||||| | ||| ||||||||||| ||||||||||||||||||||||| | || ||||| |||||| | |||||||||||||| |
|
|
| T |
16886284 |
tgtccttcatccaagagcttagaaattccaaaatcactgacatgtgcaaccatattttcatctagtaacacattactaggcttcaaatcacaatgaacca |
16886185 |
T |
|
| Q |
439 |
catgcattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcattatatttaacctttgc |
509 |
Q |
| |
|
| | ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16886184 |
ctggtattgaagaaccatgatggagatactccaatgcagatgcaacatctatcattatattcaacctttgc |
16886114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 16886812 - 16886728
Alignment:
| Q |
18 |
tttcttgtgaagatctccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatccatactctg |
102 |
Q |
| |
|
|||| ||||||||| ||||||||||| | ||||| |||||||| |||||||| | ||||| | |||||||||||||||||||| |
|
|
| T |
16886812 |
tttcctgtgaagatttccattagcattactccataactgtacacatctcctttaatagaaatgactcccttagatccatactctg |
16886728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 323 - 509
Target Start/End: Original strand, 14412266 - 14412452
Alignment:
| Q |
323 |
tgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaatcactaacatgtgcaaccatattttcatccaacaagacattggaaggcttt |
422 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||| | ||| ||||||||||| |||||||||| |||| |||||| | || ||||| |||||| |
|
|
| T |
14412266 |
tgtatgagtttttgattgtccttcatccaagagcttggaaatgccaaaatcactcacatgtgcaatcatagcttcatctagtaacacattactaggcttc |
14412365 |
T |
|
| Q |
423 |
agatcacaatgaaccacatgcattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcattatatttaacctttgc |
509 |
Q |
| |
|
| |||||||||||||| | ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| || ||||||||| |
|
|
| T |
14412366 |
aagtcacaatgaaccactggtattgaagaaccatgatggagatactccaatgcagatgccacatctatcattatgttcaacctttgc |
14412452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 14411964 - 14412033
Alignment:
| Q |
33 |
tccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatccatactctg |
102 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||| ||||||| | ||| |||||||||||||||| |
|
|
| T |
14411964 |
tccattagcattatcccatagctgtacacatctcctttaacagaaatgactcctttagatccatactctg |
14412033 |
T |
|
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