View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1900_low_8 (Length: 508)
Name: NF1900_low_8
Description: NF1900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1900_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 439; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Original strand, 36775862 - 36776368
Alignment:
| Q |
1 |
attcctaatgatcaacaaaatagtattagcaacaaggttattgtctataggaacatgaacatatatcaaggttcaaatgaagcatcaaaagatttacaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36775862 |
attcctaatgatcaacaaaatagtattagcaacaaggttattgtctataggaacatgaacatatatcaaggttcaaatgaagcatcaaaagatttacaac |
36775961 |
T |
|
| Q |
101 |
acttgtttgttttgagtgagaaaaataaggattacttggttcacaattttgggttatgcaaagcttctagagctacaaggtcttttcttttaagggaccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36775962 |
acttgtttgttttgagtgagaaaaataaggattacttggttcacaattttgggttatgcaaagcttctagagctacaaggtcttttcttttaagggaccc |
36776061 |
T |
|
| Q |
201 |
ttgc----tacattgctacttgaccactcttttattatttatttattcatccatgtcatgtcattttatctcctttaaaaagataatggaaagggagaga |
296 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36776062 |
ttgctacgtacattgctacttgaccactcttttattatttatttattcatccatgtcatgtcattttatctccttt-aaaagataatggaaagggagaga |
36776160 |
T |
|
| Q |
297 |
aaattatcatatttgtaaattattgttgtattatatttcttttatgtctatggtattattgatcattttnnnnnnnnnnnngtctatggtattgccaatt |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36776161 |
aaattatcatatttgtaaattattgttgtattatatttcttttatgtctatggtattattgatcatttt-aaaacaaaaaagtctatggtattgccaatt |
36776259 |
T |
|
| Q |
397 |
acacaactaacctatagtttaaggttcatctatataactcgttttgacagtcttgtcatcatgcttaaattacgatcattatatttgaacacttcatatt |
496 |
Q |
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| T |
36776260 |
acacaactaacctatagtttaaggttcatctatataactcgttttgacagtcttgtcatcatgcttaaattacgatcattatatttgaacacttcatatt |
36776359 |
T |
|
| Q |
497 |
cttcgacat |
505 |
Q |
| |
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|||| |||| |
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| T |
36776360 |
cttctacat |
36776368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 48 - 354
Target Start/End: Original strand, 36788735 - 36789045
Alignment:
| Q |
48 |
taggaacatgaacatatatcaaggttcaaatgaagcatcaaaagatttacaacacttgtttgttttgagtgagaaaaataaggattacttggttcacaat |
147 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||| | ||||||||| || |
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| T |
36788735 |
taggaacatgaacatatatcaaggttcaaatgaagcatcacaagatttaccacacttgtttgttttgagtgggaaaaataaggataagttggttcacgat |
36788834 |
T |
|
| Q |
148 |
tttgggttatgcaaagcttctagagctacaaggtcttttcttttaagggacccttgctacattgctacttgaccactc---ttttattatttatttattc |
244 |
Q |
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| T |
36788835 |
ttgaggttttgcaaagattatagagctacaaggtcttttttgttaagggacccttgttacattgctacctgaccactcttttttttttttttaattattc |
36788934 |
T |
|
| Q |
245 |
atccatgtcatgtcattttatctcctttaaaaagataatggaaagg-gagagaaaattatcatatttgtaaattattgttgtat--tatatttcttttat |
341 |
Q |
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||||||||||||| ||||||||||||| |||||| |||||||||| |||| ||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36788935 |
atccatgtcatgttattttatctcctt--aaaagaaaatggaaaggaaagaggaaaatatcatatttgtaaattattgttgtattatatatttcttttat |
36789032 |
T |
|
| Q |
342 |
gtctatggtatta |
354 |
Q |
| |
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||||||||||||| |
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| T |
36789033 |
gtctatggtatta |
36789045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 186
Target Start/End: Original strand, 36760715 - 36760907
Alignment:
| Q |
3 |
tcctaatgatcaacaaaatagtattagcaacaaggttatt------gtctataggaacatgaacatatatcaa---ggttcaaatgaagcatcaaaagat |
93 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||| || |||| | | |||||||||||| ||||| | |||||||||||||||| ||||| |
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| T |
36760715 |
tcctagtgatcaacaaaatagtattagcaacaaggttgttaacgttgtctctggaaacatgaacataaatcaattagcttcaaatgaagcatcacaagat |
36760814 |
T |
|
| Q |
94 |
ttacaacacttgtttgttttgagtgagaaaaataaggattacttggttcacaattttgggttatgcaaagcttctagagctacaaggtctttt |
186 |
Q |
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| T |
36760815 |
tcacaacagttgtttgttttgagaggtgtgaataaggattatttggttcatagtttgaagttttgcaaggattctagaactacaaggtctttt |
36760907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 36797138 - 36797193
Alignment:
| Q |
25 |
attagcaacaaggttattgtctataggaacatgaacatatatcaaggttcaaatga |
80 |
Q |
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||||||||||||||| ||||| | |||||||||||||| |||||| ||||||||| |
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| T |
36797138 |
attagcaacaaggtttgtgtctctgggaacatgaacataaatcaagtttcaaatga |
36797193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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