View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19010_high_1 (Length: 864)
Name: NF19010_high_1
Description: NF19010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19010_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 11492450 - 11492010
Alignment:
| Q |
1 |
cttttcataagcttttattaagtaagaattgtcgttttatgctaaacgggataaaatctttcgtgaagatcactatgatatacatagttagcatcatgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11492450 |
cttttcataagcttttattaagtaagaattgtcgttttatgctaaacgggataaaatctttcatgaagatcactatgatatacatagttagcatcatgaa |
11492351 |
T |
|
| Q |
101 |
atatgtcgttgaatactcttatgttgaatcaggcagaacattcttccttcaaagacaccttatcgtgaagttccagaaacaaatttttcaaacacatcca |
200 |
Q |
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| T |
11492350 |
acatgtcgctaaatactcttatgttgaatcaggcagaacattcttccttcaaagacaccttatcgtcaagttccagaaacaaatttttcgaacacatcca |
11492251 |
T |
|
| Q |
201 |
cataatctggaaaaagtatttctagcacaaaagtcaccct----------------------aagaaaagatataaaaataaaattgataattatgagta |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
11492250 |
cataatctggaaaaagtatttctagcacaaaagtcaccctaagttgcctagtgtgaaagaataagaaaagatataaaaataaaattgatatttatgagta |
11492151 |
T |
|
| Q |
279 |
tggatcctctactgcaaacatcagcactctgaggcaact-tgacagataatcgatgctcgttgtagttgctataacaattatctctttttccgaattctg |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11492150 |
tggatcctctactgcaaacatcagcactctgaggcaactatgacagataatcgatgctcgttgtagttgctatagcaattatctctttttccgaattctg |
11492051 |
T |
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| Q |
378 |
tcatggttaatctaaaagagtaatgttaaaatctatcaaaa |
418 |
Q |
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| T |
11492050 |
tcatggttaatctaaaagagtaatgttaaaatctatcaaaa |
11492010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 557 - 858
Target Start/End: Complemental strand, 11491920 - 11491617
Alignment:
| Q |
557 |
aaagagtgtcctaagtacactcattagcatttcaaataaataaattgaccagcgaagtggagacatacnnnnnnnnc--aaagagaagcagaatttgtta |
654 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11491920 |
aaagagtgtcctaagtacactcgttagcatttcaaataaataaattgaccagcgaagtggagacatacaaaaaaaaacaaaagagaagcagaatttgtta |
11491821 |
T |
|
| Q |
655 |
taccacttgcattttagtatttgttgtgacatcacaatcgtaacttgctctttacaaaacaccagcttctgctgtcttttacacgctggtttctagtgag |
754 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
11491820 |
taccacttgcattttagtatttgttgtgacatcataatcgtaacttgctctttaaaaaacaccagcttctgctgtcttttacatgctgatttctagtgag |
11491721 |
T |
|
| Q |
755 |
ttcatgaacatgtttctcaacaaaaagctcgttgacgattcaatcttggcaaacctgaagaaaacactggttctaactgttgtacttaatgatgatgatg |
854 |
Q |
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| T |
11491720 |
ttcatgaacatgtttctcaacaaaaagctcgttgacgattcaatcttggcaaacctgaagaaaacacaggttctaactgttgtacttaatgatgatgatg |
11491621 |
T |
|
| Q |
855 |
atgt |
858 |
Q |
| |
|
|||| |
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|
| T |
11491620 |
atgt |
11491617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 14146520 - 14146569
Alignment:
| Q |
112 |
aatactcttatgttgaatcaggcagaacattcttccttcaaagacacctt |
161 |
Q |
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|||||||||||||||||||||| ||||||||||| |||| ||||||||| |
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| T |
14146520 |
aatactcttatgttgaatcaggaagaacattcttgtttcagagacacctt |
14146569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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