View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19010_high_4 (Length: 441)
Name: NF19010_high_4
Description: NF19010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19010_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 9 - 425
Target Start/End: Original strand, 40565248 - 40565660
Alignment:
| Q |
9 |
attattctgtgatttgttcatgggttggagccattgtaacacctgcacccacgtcctatgttcttcggcttctctgaattcagcttcataccaaacttct |
108 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40565248 |
attattatgtgattggttcatgggttggagccattgtaacacc---acccacgtcctatgttcttcggcttctctgaattcagcttcataccaaacttct |
40565344 |
T |
|
| Q |
109 |
gtcgcagcctcacatccgaaaaaacaatgcctatcactctcccacatcagctcacaactttcacactcgagggcaggaaccacttctttgaataccaata |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
40565345 |
gtcgcagcctcacatccgaaaaaacaatgcctatcactctcccacatcagctcacaactttcaccctcgagggcaggaaccacttctttgaataccaata |
40565444 |
T |
|
| Q |
209 |
atatgcatacaaatatgcacatcaatgtcatcaaaaacaaagactttgtcaataacagagacgttagtatatataacattatcatgatcgatcaaaagga |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40565445 |
atatgcatacaaatatgcacatcaatgtcatcaaaaacaaagactttgtcaataacagagacgttagtatatataacattatcat----gatcaaaagga |
40565540 |
T |
|
| Q |
309 |
ttagaccatttataatataaatatgtgtaca---aattcacgtttagaatcacaactactcaacggtttcttttttatacataatatacaaacatggttt |
405 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40565541 |
ttagaccatttataatataaatatgtatacaaataattcacgtttagaatcataactactcaacggtttcttttttatacataatatacaaacatggttt |
40565640 |
T |
|
| Q |
406 |
ttgacaaaaacagaatatat |
425 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
40565641 |
ttgacaaaaacagaatatat |
40565660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University