View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19010_low_2 (Length: 700)

Name: NF19010_low_2
Description: NF19010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19010_low_2
NF19010_low_2
[»] chr3 (17 HSPs)
chr3 (10-683)||(11492509-11493182)
chr3 (16-131)||(14145895-14146010)
chr3 (74-127)||(18405861-18405914)
chr3 (70-131)||(21367650-21367711)
chr3 (70-115)||(22203429-22203474)
chr3 (70-122)||(44747434-44747486)
chr3 (67-127)||(45541558-45541618)
chr3 (74-129)||(53789491-53789546)
chr3 (77-131)||(12862281-12862334)
chr3 (77-131)||(30956659-30956713)
chr3 (77-131)||(30972471-30972525)
chr3 (70-131)||(36631077-36631138)
chr3 (70-131)||(39980712-39980773)
chr3 (67-116)||(46886715-46886764)
chr3 (70-131)||(47132314-47132375)
chr3 (74-130)||(33405197-33405253)
chr3 (94-130)||(41057022-41057058)
[»] chr1 (24 HSPs)
chr1 (70-131)||(24915077-24915138)
chr1 (70-131)||(3234041-3234102)
chr1 (70-131)||(49888750-49888811)
chr1 (89-131)||(27976578-27976620)
chr1 (70-131)||(473147-473208)
chr1 (70-131)||(7218100-7218161)
chr1 (70-131)||(17603410-17603471)
chr1 (86-131)||(25006076-25006121)
chr1 (71-131)||(7244685-7244745)
chr1 (89-133)||(12287237-12287281)
chr1 (70-129)||(15515526-15515585)
chr1 (26-60)||(24915021-24915055)
chr1 (70-128)||(42174841-42174899)
chr1 (86-127)||(3069976-3070017)
chr1 (70-115)||(7137024-7137069)
chr1 (86-131)||(23445317-23445362)
chr1 (70-115)||(26779951-26779996)
chr1 (86-131)||(29045954-29045999)
chr1 (42-119)||(37769658-37769735)
chr1 (70-131)||(51695521-51695582)
chr1 (89-129)||(12564919-12564959)
chr1 (206-242)||(19851112-19851148)
chr1 (94-130)||(25005847-25005883)
chr1 (70-122)||(34290228-34290280)
[»] chr4 (11 HSPs)
chr4 (70-129)||(16200007-16200066)
chr4 (70-121)||(17822891-17822942)
chr4 (70-133)||(35571657-35571720)
chr4 (70-131)||(49202628-49202689)
chr4 (65-115)||(2111071-2111121)
chr4 (70-120)||(9760434-9760484)
chr4 (70-120)||(55414446-55414496)
chr4 (70-131)||(1706605-1706666)
chr4 (70-119)||(41512646-41512695)
chr4 (86-131)||(49940033-49940078)
chr4 (70-131)||(50681115-50681176)
[»] chr6 (15 HSPs)
chr6 (70-131)||(9093582-9093643)
chr6 (70-131)||(20368206-20368267)
chr6 (86-131)||(24626278-24626323)
chr6 (70-131)||(34430487-34430548)
chr6 (70-131)||(35099020-35099081)
chr6 (57-119)||(835262-835324)
chr6 (97-131)||(6909925-6909959)
chr6 (94-131)||(415287-415324)
chr6 (70-131)||(837242-837303)
chr6 (70-131)||(6536598-6536659)
chr6 (94-131)||(11784080-11784117)
chr6 (70-131)||(26694861-26694922)
chr6 (70-126)||(13907573-13907629)
chr6 (70-114)||(31812039-31812083)
chr6 (74-131)||(34910439-34910498)
[»] chr5 (14 HSPs)
chr5 (70-131)||(12425554-12425615)
chr5 (70-131)||(39105447-39105508)
chr5 (70-129)||(28776978-28777037)
chr5 (70-132)||(25461073-25461135)
chr5 (94-131)||(6587157-6587194)
chr5 (86-131)||(10272473-10272518)
chr5 (73-121)||(32942611-32942659)
chr5 (97-131)||(31038277-31038311)
chr5 (97-131)||(31047501-31047535)
chr5 (94-127)||(2568645-2568678)
chr5 (70-131)||(16937909-16937970)
chr5 (70-131)||(29925824-29925885)
chr5 (70-127)||(43300865-43300922)
chr5 (94-130)||(13244532-13244568)
[»] chr2 (15 HSPs)
chr2 (67-131)||(26626856-26626920)
chr2 (72-131)||(1625883-1625942)
chr2 (70-131)||(12464499-12464560)
chr2 (70-131)||(18066111-18066172)
chr2 (86-131)||(41851518-41851563)
chr2 (94-129)||(5759625-5759660)
chr2 (72-131)||(40279180-40279239)
chr2 (86-132)||(29628785-29628831)
chr2 (70-131)||(656803-656864)
chr2 (70-131)||(680486-680547)
chr2 (94-131)||(11513881-11513918)
chr2 (206-242)||(27971220-27971256)
chr2 (206-242)||(28049606-28049642)
chr2 (206-242)||(28050704-28050740)
chr2 (70-118)||(40279403-40279451)
[»] chr8 (8 HSPs)
chr8 (86-127)||(24558840-24558881)
chr8 (70-131)||(27028814-27028875)
chr8 (70-122)||(30251480-30251532)
chr8 (88-131)||(9834833-9834876)
chr8 (70-127)||(9956840-9956897)
chr8 (86-130)||(12010870-12010914)
chr8 (206-242)||(17230796-17230832)
chr8 (74-130)||(38648335-38648391)
[»] chr7 (12 HSPs)
chr7 (70-131)||(420343-420404)
chr7 (70-131)||(12110343-12110404)
chr7 (70-131)||(34744011-34744072)
chr7 (71-131)||(46280299-46280359)
chr7 (60-127)||(40689002-40689069)
chr7 (70-129)||(43648225-43648284)
chr7 (77-131)||(27548246-27548300)
chr7 (65-131)||(48470027-48470093)
chr7 (74-131)||(17944373-17944430)
chr7 (70-131)||(19022611-19022672)
chr7 (70-131)||(47177619-47177680)
chr7 (70-114)||(47130811-47130855)
[»] scaffold0528 (1 HSPs)
scaffold0528 (97-131)||(1025-1059)


Alignment Details
Target: chr3 (Bit Score: 565; Significance: 0; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 10 - 683
Target Start/End: Original strand, 11492509 - 11493182
Alignment:
Q  10 attattcttataaaagtgtttggcacaatttatgaaaacaacttatgacatgttgtgaggttattttcataagtaatccaagacagcttatgaaaacaac 109  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||    
T  11492509 attattcttataaaagtgtttggcataatttatgaaaacaacttatgacatgttgtgaggttattttcattagtaatccaaggcagcttatgtaaacaac 11492608  T
Q  110 ttatagcatatacgaaaacaatattgctatgcaatgattgtatgtgacatattgttactataattaaattcatgtcctctttacacttcaatgaattttt 209  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11492609 ttatagcatatacaaaaacaatattgttatgcaatgattgtatgtgacatattgttactataattaaattcatgtcctctttacacttcaatgaattttt 11492708  T
Q  210 tggaatcaatgaaaagaatatggttctgcaatgaatttttgctatactcaactaaactcttgttctttcnnnnnnnggatgatcattttctgaatgtgtg 309  Q
    |||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||       ||||||||||||||||||| ||||    
T  11492709 tggaatcaatgaaaagaatatgcttctgcaattaatttttgcaatactcaactaaactcttgttctttcgttttttggatgatcattttctgaatttgtg 11492808  T
Q  310 agatataggatgaatgttccatgacaactgccgaggatttctctacgaaggcctagatattcgctggaaatcattcagattagtgcagaaaaccgttgga 409  Q
    | ||||||||||||||||||||||||| |||| | ||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  11492809 aaatataggatgaatgttccatgacaattgcctacgatttctctacgaagacctggatattcgccggaaatcattcagattagtgcagaaaaccgttgga 11492908  T
Q  410 agatctaccacgagttgagcagcagatacaaatctgacataaaaatatagatactctgattaagttggatggaattcatatataggattagaggcaaata 509  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  11492909 agatctaccaagagttgagcagcagatacaaatctgacataaaaatatagatactctgattaagtttgatggaattcatatataggagtagaggcaaata 11493008  T
Q  510 aaacagtctacattctatattactagaagttactacggtttttcggaaggtacacaaataggatacatgcatcgctaatgaagtaaagttaatggccacg 609  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11493009 aaacagtctacattctaaattactagaagttactacggtttttcggatggtacacaaataggatacatgcatcgctaatgaagtaaagttaatggccacg 11493108  T
Q  610 tttcctttgagtttgggaaaatatttcagggagggaaatatattgaatgaagaacaactaattcgaaagaattc 683  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11493109 tttcctttgagtttgggaaaatatttcagggagggaaatatattgaatgaagaacaactaattcgaaagaattc 11493182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 14146010 - 14145895
Alignment:
Q  16 cttataaaagtgtttggcacaatttatgaaaacaacttatgacatgttgtgaggttattttcataagtaatccaagacagcttatgaaaacaacttatag 115  Q
    ||||||||||||||||||| ||| |||||||||||||||| ||||  |||||| ||||||||||||||||||||||| |||||||||||| |||||||||    
T  14146010 cttataaaagtgtttggcaaaatatatgaaaacaacttataacattgtgtgagcttattttcataagtaatccaagatagcttatgaaaataacttatag 14145911  T
Q  116 catatacgaaaacaat 131  Q
    ||||||||||||||||    
T  14145910 catatacgaaaacaat 14145895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 18405861 - 18405914
Alignment:
Q  74 tttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaa 127  Q
    ||||||||||  ||||||| ||||||||||||||||||||||||||||| ||||    
T  18405861 tttcataagttctccaagatagcttatgaaaacaacttatagcatatacaaaaa 18405914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 21367711 - 21367650
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||||||||||  ||||||| |||||||||||||||||||||   ||||||||||||||    
T  21367711 ttattttcataagttctccaagatagcttatgaaaacaacttatacattatacgaaaacaat 21367650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 22203474 - 22203429
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatag 115  Q
    ||||||||||||||  ||||||| ||||||||||||||||||||||    
T  22203474 ttattttcataagttctccaagatagcttatgaaaacaacttatag 22203429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 44747434 - 44747486
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatac 122  Q
    ||||||||||||||  ||||||| |||||||||||||| |||||||| |||||    
T  44747434 ttattttcataagttttccaagatagcttatgaaaacagcttatagcctatac 44747486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 45541618 - 45541558
Alignment:
Q  67 aggttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaa 127  Q
    |||||||| |||||||| |||||||| |||||||||||| ||  |||||| ||||||||||    
T  45541618 aggttattctcataagttatccaagatagcttatgaaaataaactatagcttatacgaaaa 45541558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 53789491 - 53789546
Alignment:
Q  74 tttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaaca 129  Q
    ||||||||||  |||| || ||||||||| ||||||||||||||||||| ||||||    
T  53789491 tttcataagttctccatgatagcttatgataacaacttatagcatataccaaaaca 53789546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 12862281 - 12862334
Alignment:
Q  77 cataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    |||||||  ||||| | ||||||||||||||||||||||||||||| ||||||||    
T  12862281 cataagttctccaatatagcttatgaaaacaacttatagcatatac-aaaacaat 12862334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 30956659 - 30956713
Alignment:
Q  77 cataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    |||||||  ||||||| ||||| ||||||||||||||||| ||||| ||||||||    
T  30956659 cataagttctccaagatagcttttgaaaacaacttatagcctatacaaaaacaat 30956713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 30972471 - 30972525
Alignment:
Q  77 cataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    |||||||  ||||||| ||||| ||||||||||||||||| ||||| ||||||||    
T  30972471 cataagttctccaagatagcttttgaaaacaacttatagcctatacaaaaacaat 30972525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 36631077 - 36631138
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||||||||||  ||||| | |||| || ||||||||||||||||| ||| ||||||||    
T  36631077 ttattttcataagttctccaatatagctcataaaaacaacttatagcatgtacaaaaacaat 36631138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 39980773 - 39980712
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||||||||||  ||||| | ||||||| ||||||||||||||||| | | ||||||||    
T  39980773 ttattttcataagttctccaatatagcttataaaaacaacttatagcatgttcaaaaacaat 39980712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 46886715 - 46886764
Alignment:
Q  67 aggttattttcataagtaatccaagacagcttatgaaaacaacttatagc 116  Q
    |||||||||||| ||||  ||||||| |||||||||||||| ||||||||    
T  46886715 aggttattttcaaaagttctccaagatagcttatgaaaacagcttatagc 46886764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 47132375 - 47132314
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    |||||||||||| |  ||||| | ||||||| |||||||| |||||||||||| ||||||||    
T  47132375 ttattttcataacttctccaatatagcttataaaaacaacctatagcatatacaaaaacaat 47132314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 33405197 - 33405253
Alignment:
Q  74 tttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaa 130  Q
    ||||||||||  | ||||| |||||||||||||| |||||||| |||| ||||||||    
T  33405197 tttcataagttcttcaagatagcttatgaaaacagcttatagcttatatgaaaacaa 33405253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 41057058 - 41057022
Alignment:
Q  94 agcttatgaaaacaacttatagcatatacgaaaacaa 130  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  41057058 agcttatgaaaacaacttatagcttatatgaaaacaa 41057022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 24915077 - 24915138
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||||| ||||  |||||||||||||||||||||| |||||||||||||| ||||||||    
T  24915077 ttattttcacaagttctccaagacagcttatgaaaacagcttatagcatatacaaaaacaat 24915138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 3234041 - 3234102
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||||||||||  ||||| | ||||||| ||||||||||||||||||||| ||||||||    
T  3234041 ttattttcataagttctccaatatagcttataaaaacaacttatagcatatacaaaaacaat 3234102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 49888811 - 49888750
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||||||||||  || |||| ||||||||||||||||| ||||| ||||||||||||||    
T  49888811 ttattttcataagttctctaagatagcttatgaaaacaactaatagcttatacgaaaacaat 49888750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 27976620 - 27976578
Alignment:
Q  89 aagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    |||| ||||||||||||||||||||||||||||| ||||||||    
T  27976620 aagatagcttatgaaaacaacttatagcatatacaaaaacaat 27976578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 473208 - 473147
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||||||||||  ||||| | | ||||| |||||||||||||||||| |||||||||||    
T  473208 ttattttcataagttctccaatagaacttataaaaacaacttatagcatacacgaaaacaat 473147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 7218100 - 7218161
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||||||||||  |||| || || |||||||||||||||||||| |||| |||||||||    
T  7218100 ttattttcataagttctccaggataggttatgaaaacaacttatagcttatatgaaaacaat 7218161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 17603410 - 17603471
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||||| ||||  ||||| | ||||||| ||||||||||||||||||||| ||||||||    
T  17603410 ttattttcagaagttctccaatatagcttataaaaacaacttatagcatatacaaaaacaat 17603471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 25006076 - 25006121
Alignment:
Q  86 tccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||| ||||||||||||||||||||||| |||| |||||||||    
T  25006076 tccaagatagcttatgaaaacaacttatagcttatatgaaaacaat 25006121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 7244685 - 7244745
Alignment:
Q  71 tattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    |||||||||| ||  |||||||  ||||||||||||||| |||||| ||||||||||||||    
T  7244685 tattttcatacgttctccaagatcgcttatgaaaacaacgtatagcttatacgaaaacaat 7244745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 12287237 - 12287281
Alignment:
Q  89 aagacagcttatgaaaacaacttatagcatatacgaaaacaatat 133  Q
    |||| |||||| |||||||||||||||||||||| ||||||||||    
T  12287237 aagatagcttaagaaaacaacttatagcatatacaaaaacaatat 12287281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 15515585 - 15515526
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaaca 129  Q
    |||||| ||||||  ||||| || | ||||||||||||||||||||| ||||||||||||    
T  15515585 ttatttccataagctatccatgataacttatgaaaacaacttatagcttatacgaaaaca 15515526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 24915021 - 24915055
Alignment:
Q  26 tgtttggcacaatttatgaaaacaacttatgacat 60  Q
    ||||||| |||||||||||||||||||||||||||    
T  24915021 tgtttgggacaatttatgaaaacaacttatgacat 24915055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 42174899 - 42174841
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaac 128  Q
    ||||||||||||||  ||||| | | ||||| ||||||||||||||||||||| |||||    
T  42174899 ttattttcataagttctccaatataacttataaaaacaacttatagcatatacaaaaac 42174841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 3069976 - 3070017
Alignment:
Q  86 tccaagacagcttatgaaaacaacttatagcatatacgaaaa 127  Q
    ||||||| |||||| ||||||| |||||||||||||||||||    
T  3069976 tccaagatagcttacgaaaacagcttatagcatatacgaaaa 3070017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 7137024 - 7137069
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatag 115  Q
    ||||||||||||||  ||||||| |||||||||||||| |||||||    
T  7137024 ttattttcataagttctccaagatagcttatgaaaacagcttatag 7137069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 23445362 - 23445317
Alignment:
Q  86 tccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||| |||||||||||||||||||| || ||||| ||||||||    
T  23445362 tccaagatagcttatgaaaacaacttatggcttatacaaaaacaat 23445317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 26779951 - 26779996
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatag 115  Q
    ||||||||||||||  | ||||| ||||||||||||||||||||||    
T  26779951 ttattttcataagttcttcaagatagcttatgaaaacaacttatag 26779996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 29045954 - 29045999
Alignment:
Q  86 tccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    |||| |||||||||||||||||||||||||| |||| || ||||||    
T  29045954 tccaggacagcttatgaaaacaacttatagcttatatgagaacaat 29045999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 119
Target Start/End: Original strand, 37769658 - 37769735
Alignment:
Q  42 tgaaaacaacttatgacatgttgtgaggttattttcataagtaatccaagacagcttatgaaaacaacttatagcata 119  Q
    |||||||| |||||||||| || | || || ||||||||| |  | ||||||||||||| |||||||||| |||||||    
T  37769658 tgaaaacagcttatgacattttttcagcttgttttcataaattctgcaagacagcttataaaaacaacttgtagcata 37769735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 51695521 - 51695582
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    |||||||||||| |  ||||||| |||||||||||||| || ||| | ||||||||||||||    
T  51695521 ttattttcataaattctccaagatagcttatgaaaacatctgataacttatacgaaaacaat 51695582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 12564919 - 12564959
Alignment:
Q  89 aagacagcttatgaaaacaacttatagcatatacgaaaaca 129  Q
    |||| ||||||||||||||||||||||| |||| |||||||    
T  12564919 aagatagcttatgaaaacaacttatagcttatatgaaaaca 12564959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 19851112 - 19851148
Alignment:
Q  206 tttttggaatcaatgaaaagaatatggttctgcaatg 242  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  19851112 tttttgaaatcaattaaaagaatatggttctgcaatg 19851148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 25005847 - 25005883
Alignment:
Q  94 agcttatgaaaacaacttatagcatatacgaaaacaa 130  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  25005847 agcttatgaaaacaacttatagcttatatgaaaacaa 25005883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 34290280 - 34290228
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatac 122  Q
    ||||||||||||||  | ||||| |||||||||||||| |||||||| |||||    
T  34290280 ttattttcataagttcttcaagatagcttatgaaaacagcttatagcttatac 34290228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 16200007 - 16200066
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaaca 129  Q
    ||||||||||||||  ||||||| |||||||||||||| |||||||||||||| ||||||    
T  16200007 ttattttcataagtcctccaagatagcttatgaaaacagcttatagcatatacaaaaaca 16200066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 17822891 - 17822942
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatata 121  Q
    ||||||||||||||  ||||||| ||||||||||||||||||||||||||||    
T  17822891 ttattttcataagttctccaagatagcttatgaaaacaacttatagcatata 17822942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 35571657 - 35571720
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaatat 133  Q
    ||||||||| ||||  || |||| |||||||||||||| |||||||| ||||||||||||||||    
T  35571657 ttattttcacaagttctctaagatagcttatgaaaacagcttatagcttatacgaaaacaatat 35571720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 49202689 - 49202628
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    |||||||||| ||| |||||||| |||||| |||||||||||||||| |||||  |||||||    
T  49202689 ttattttcattagttatccaagatagcttacgaaaacaacttatagcttataccgaaacaat 49202628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 2111071 - 2111121
Alignment:
Q  65 tgaggttattttcataagtaatccaagacagcttatgaaaacaacttatag 115  Q
    |||| ||||||||||||||  | ||||| ||||||||||||||||||||||    
T  2111071 tgagcttattttcataagtccttcaagatagcttatgaaaacaacttatag 2111121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 9760484 - 9760434
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatat 120  Q
    ||||||||||||||  ||||| | ||||||| |||||||||||||||||||    
T  9760484 ttattttcataagttctccaatatagcttataaaaacaacttatagcatat 9760434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 70 - 120
Target Start/End: Original strand, 55414446 - 55414496
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatat 120  Q
    ||||||||||||||  ||||||| | ||||||||||||| |||||||||||    
T  55414446 ttattttcataagttctccaagataacttatgaaaacaatttatagcatat 55414496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 1706666 - 1706605
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    |||||||||||||   ||||||| || ||||||||||| |||||||| | ||||||||||||    
T  1706666 ttattttcataagctgtccaagatagtttatgaaaacagcttatagcttctacgaaaacaat 1706605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 41512695 - 41512646
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcata 119  Q
    ||||||||||||||  | | ||| ||||||||||||||||||||||||||    
T  41512695 ttattttcataagttcttccagaaagcttatgaaaacaacttatagcata 41512646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 49940033 - 49940078
Alignment:
Q  86 tccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||| |||||||||||||| || ||||| ||||||||||||||    
T  49940033 tccaagatagcttatgaaaacagctaatagcttatacgaaaacaat 49940078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 50681115 - 50681176
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    |||||||||||| |  ||||| | |||||||  |||||||||||||||||||| ||||||||    
T  50681115 ttattttcataatttctccaatatagcttatataaacaacttatagcatatacaaaaacaat 50681176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 9093582 - 9093643
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    |||||||| |||||  || ||||||||||||||||||| |||||||| ||||||||||||||    
T  9093582 ttattttcttaagttctctaagacagcttatgaaaacagcttatagcttatacgaaaacaat 9093643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 20368206 - 20368267
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||||||||||  ||||||| ||||||||||||||||||||| |  |||| ||||||||    
T  20368206 ttattttcataagttctccaagaaagcttatgaaaacaacttataactcatacaaaaacaat 20368267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 24626323 - 24626278
Alignment:
Q  86 tccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||||    
T  24626323 tccaagatagcttatgaaaacaacttatagaatatacaaaaacaat 24626278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 34430487 - 34430548
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    |||||||||||| |  ||||||| |||||||||||||| |||||| ||||||| ||||||||    
T  34430487 ttattttcataacttctccaagatagcttatgaaaacaccttataacatatacaaaaacaat 34430548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 35099081 - 35099020
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||||| || || || |||| ||||||||||||||||||||| ||||||| ||||||||    
T  35099081 ttattttcaaaaatactctaagatagcttatgaaaacaacttataacatatacaaaaacaat 35099020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 835262 - 835324
Alignment:
Q  57 acatgttgtgaggttattttcataagtaatccaagacagcttatgaaaacaacttatagcata 119  Q
    ||||||| | || ||||||||||||||  ||||||| |||||||||||||  |||||||||||    
T  835262 acatgttttcagcttattttcataagttctccaagatagcttatgaaaactgcttatagcata 835324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 97 - 131
Target Start/End: Original strand, 6909925 - 6909959
Alignment:
Q  97 ttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    |||||||||||||||||||||||||| ||||||||    
T  6909925 ttatgaaaacaacttatagcatatacaaaaacaat 6909959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 415324 - 415287
Alignment:
Q  94 agcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  415324 agcttataaaaacaacttatagcttatacgaaaacaat 415287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 837242 - 837303
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||||||||||  ||||||| |||| |||||||| ||||||||| || || ||||||||    
T  837242 ttattttcataagttctccaagatagctaatgaaaactacttatagcttacaccaaaacaat 837303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 6536659 - 6536598
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    |||||||||||| |  ||||| | ||||| | ||||||||||||||||||||| ||||||||    
T  6536659 ttattttcataaattctccaatatagcttctaaaaacaacttatagcatatacaaaaacaat 6536598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 11784080 - 11784117
Alignment:
Q  94 agcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  11784080 agcttatgaaaacagcttatagcatatacaaaaacaat 11784117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 26694922 - 26694861
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||||||||||  | ||||| || |||||||||||| ||||| |||||||| |||||||    
T  26694922 ttattttcataagttcttcaagatagtttatgaaaacaatttataacatatacggaaacaat 26694861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 13907629 - 13907573
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaa 126  Q
    |||||||||||| |  |||||||  |||||||||||||||||||||  |||||||||    
T  13907629 ttattttcataatttctccaagatggcttatgaaaacaacttataggttatacgaaa 13907573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 31812039 - 31812083
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttata 114  Q
    |||||||||||||   ||||||| |||||||||||||||||||||    
T  31812039 ttattttcataagctctccaagatagcttatgaaaacaacttata 31812083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 34910439 - 34910498
Alignment:
Q  74 tttcataagtaatccaagacagcttatgaaaacaacttatagc--atatacgaaaacaat 131  Q
    ||||||||||  ||||| |||| |||||| |||||||||||||  |||||||||||||||    
T  34910439 tttcataagttctccaaaacagattatgagaacaacttatagcttatatacgaaaacaat 34910498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 12425615 - 12425554
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||||||||||  ||||||| ||||| |||||||| |||||||| ||||||||||||||    
T  12425615 ttattttcataagttctccaagatagcttgtgaaaacagcttatagcttatacgaaaacaat 12425554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 39105508 - 39105447
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||||||||||  ||||||| ||||||||||||||  ||||||| ||||||||||||||    
T  39105508 ttattttcataagttctccaagatagcttatgaaaacagattatagcttatacgaaaacaat 39105447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 28777037 - 28776978
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaaca 129  Q
    |||||||||| |||  ||||||| |||||||||||||| |||||||| ||||||||||||    
T  28777037 ttattttcattagttctccaagatagcttatgaaaacagcttatagcctatacgaaaaca 28776978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 25461135 - 25461073
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaata 132  Q
    |||||||||| |||  ||||| | ||||||||||||||||||||| ||||||| |||||||||    
T  25461135 ttattttcatcagttctccaatagagcttatgaaaacaacttataacatatacaaaaacaata 25461073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 6587157 - 6587194
Alignment:
Q  94 agcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  6587157 agcttatgaaaacaacttatagcttatacgaaaacaat 6587194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 10272473 - 10272518
Alignment:
Q  86 tccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    |||||||  |||||||||||||||||||||| ||||||||||||||    
T  10272473 tccaagatggcttatgaaaacaacttatagcttatacgaaaacaat 10272518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 32942659 - 32942611
Alignment:
Q  73 ttttcataagtaatccaagacagcttatgaaaacaacttatagcatata 121  Q
    |||||||||||  ||||||| |||||||||||||| |||||||||||||    
T  32942659 ttttcataagttctccaagatagcttatgaaaacagcttatagcatata 32942611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 31038311 - 31038277
Alignment:
Q  97 ttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||| |||||||||||||||||||||||||||||    
T  31038311 ttatggaaacaacttatagcatatacgaaaacaat 31038277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 31047535 - 31047501
Alignment:
Q  97 ttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||| |||||||||||||||||||||||||||||    
T  31047535 ttatggaaacaacttatagcatatacgaaaacaat 31047501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 127
Target Start/End: Complemental strand, 2568678 - 2568645
Alignment:
Q  94 agcttatgaaaacaacttatagcatatacgaaaa 127  Q
    ||||||||||||||||||||||| ||||||||||    
T  2568678 agcttatgaaaacaacttatagcttatacgaaaa 2568645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 16937909 - 16937970
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    |||||||| |||||  ||||| | ||| ||| ||||||||||||||||||||| ||||||||    
T  16937909 ttattttcctaagttctccaatatagcgtataaaaacaacttatagcatatacaaaaacaat 16937970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 29925885 - 29925824
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||||||||||  ||||| | |||||||| ||||||||||||||| ||||  |||||||    
T  29925885 ttattttcataagttctccaatatagcttatgtaaacaacttatagcacatacagaaacaat 29925824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 43300922 - 43300865
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaa 127  Q
    ||||||||||||||  ||||||| ||||||  |||||||||||||| |||||| ||||    
T  43300922 ttattttcataagttctccaagatagcttacaaaaacaacttataggatatacaaaaa 43300865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 13244532 - 13244568
Alignment:
Q  94 agcttatgaaaacaacttatagcatatacgaaaacaa 130  Q
    ||||||||||||||||||||||  |||||||||||||    
T  13244532 agcttatgaaaacaacttatagtttatacgaaaacaa 13244568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 26626920 - 26626856
Alignment:
Q  67 aggttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    |||||||||||||||||  | ||||| |||||||||||||| ||| |||| ||||||||||||||    
T  26626920 aggttattttcataagttctgcaagatagcttatgaaaacagcttctagcttatacgaaaacaat 26626856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 1625942 - 1625883
Alignment:
Q  72 attttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    |||||| |||||  ||||||| ||||||||||||||||||||| | ||||||||||||||    
T  1625942 attttcgtaagttctccaagatagcttatgaaaacaacttataacttatacgaaaacaat 1625883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 12464499 - 12464560
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||||| ||||  ||||||| |||||||||||| | |||||||||||||| ||||||||    
T  12464499 ttattttcacaagttctccaagatagcttatgaaaatagcttatagcatatacaaaaacaat 12464560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 18066172 - 18066111
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    |||||||| |||||  ||||||| |||||||||||||| |||||||| |||| |||||||||    
T  18066172 ttattttcttaagttctccaagatagcttatgaaaacagcttatagcttatatgaaaacaat 18066111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 41851563 - 41851518
Alignment:
Q  86 tccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||| ||||| ||||||||||||||||||||||| ||||||||    
T  41851563 tccaagatagcttctgaaaacaacttatagcatatacaaaaacaat 41851518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 129
Target Start/End: Original strand, 5759625 - 5759660
Alignment:
Q  94 agcttatgaaaacaacttatagcatatacgaaaaca 129  Q
    |||||||||||||| |||||||||||||||||||||    
T  5759625 agcttatgaaaacagcttatagcatatacgaaaaca 5759660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 40279239 - 40279180
Alignment:
Q  72 attttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||||||||  ||||| | ||||||||||||||||||||| | ||||| ||||||||    
T  40279239 attttcataagttctccaacatagcttatgaaaacaacttatatcttataccaaaacaat 40279180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 29628785 - 29628831
Alignment:
Q  86 tccaagacagcttatgaaaacaacttatagcatatacgaaaacaata 132  Q
    ||||||| ||||||||| ||||||||||||| ||||| |||||||||    
T  29628785 tccaagatagcttatgagaacaacttatagcttatacaaaaacaata 29628831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 656803 - 656864
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    |||||||||||||   | ||||| ||||||||||| ||||||| ||| ||||||||||||||    
T  656803 ttattttcataagctctgcaagatagcttatgaaatcaacttacagcttatacgaaaacaat 656864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 680547 - 680486
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||||| ||||  | ||||| |||||||||||| | |||||||| ||||||||||||||    
T  680547 ttattttcacaagttcttcaagatagcttatgaaaatagcttatagcttatacgaaaacaat 680486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 11513918 - 11513881
Alignment:
Q  94 agcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  11513918 agcttatgaaaacaacttatagcttatatgaaaacaat 11513881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 27971220 - 27971256
Alignment:
Q  206 tttttggaatcaatgaaaagaatatggttctgcaatg 242  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  27971220 tttttgaaatcaattaaaagaatatggttctgcaatg 27971256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 28049606 - 28049642
Alignment:
Q  206 tttttggaatcaatgaaaagaatatggttctgcaatg 242  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  28049606 tttttgaaatcaattaaaagaatatggttctgcaatg 28049642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 28050704 - 28050740
Alignment:
Q  206 tttttggaatcaatgaaaagaatatggttctgcaatg 242  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  28050704 tttttgaaatcaattaaaagaatatggttctgcaatg 28050740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 40279451 - 40279403
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcat 118  Q
    ||||||||||||||  ||||| | |||||||||||||||||||| ||||    
T  40279451 ttattttcataagttctccaatatagcttatgaaaacaacttatggcat 40279403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 24558881 - 24558840
Alignment:
Q  86 tccaagacagcttatgaaaacaacttatagcatatacgaaaa 127  Q
    ||||||| ||||||||||||||||||||||| ||||||||||    
T  24558881 tccaagatagcttatgaaaacaacttatagcttatacgaaaa 24558840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 27028875 - 27028814
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    |||||||||||||   ||||||| |||||||||||||| ||||||||||||||  |||||||    
T  27028875 ttattttcataagctctccaagatagcttatgaaaacagcttatagcatatacacaaacaat 27028814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 30251480 - 30251532
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatac 122  Q
    ||||||||||||||  ||||||| |||||||||||||| |||||| |||||||    
T  30251480 ttattttcataagtggtccaagatagcttatgaaaacagcttataacatatac 30251532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 9834833 - 9834876
Alignment:
Q  88 caagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||| ||||||||||||||||||||||| |||| |||||||||    
T  9834833 caagatagcttatgaaaacaacttatagcttatatgaaaacaat 9834876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 9956840 - 9956897
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaa 127  Q
    ||||||||||||||  ||||||| || |||||||||||||||||| | |||| |||||    
T  9956840 ttattttcataagttctccaagatagattatgaaaacaacttataacttataggaaaa 9956897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 12010914 - 12010870
Alignment:
Q  86 tccaagacagcttatgaaaacaacttatagcatatacgaaaacaa 130  Q
    ||||| |||| ||||||||||||||||||||||| || |||||||    
T  12010914 tccaatacagattatgaaaacaacttatagcatacacaaaaacaa 12010870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 17230796 - 17230832
Alignment:
Q  206 tttttggaatcaatgaaaagaatatggttctgcaatg 242  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  17230796 tttttgaaatcaattaaaagaatatggttctgcaatg 17230832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 38648391 - 38648335
Alignment:
Q  74 tttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaa 130  Q
    ||||||||||  | ||||| ||||||||||||||||| ||| ||||||| |||||||    
T  38648391 tttcataagttctacaagatagcttatgaaaacaactcataacatatacaaaaacaa 38648335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 420404 - 420343
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||||||||||  ||||| | |||||| | |||||||||||||||||||| ||||||||    
T  420404 ttattttcataagttctccaatatagcttacggaaacaacttatagcatatacaaaaacaat 420343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 12110404 - 12110343
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||||||||||  | ||||| |||||||||||||| |||||||| ||||| ||||||||    
T  12110404 ttattttcataagttcttcaagatagcttatgaaaacagcttatagcttataccaaaacaat 12110343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 34744072 - 34744011
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||| ||||||  ||||| | ||||||||||||||||||||| ||||||| ||||||||    
T  34744072 ttatttttataagttctccaatatagcttatgaaaacaacttataccatatacaaaaacaat 34744011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 46280299 - 46280359
Alignment:
Q  71 tattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    |||||||||||||  ||||| | ||||||| |||||| |||||||||||||| ||||||||    
T  46280299 tattttcataagttctccaatatagcttataaaaacagcttatagcatatacaaaaacaat 46280359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 40689002 - 40689069
Alignment:
Q  60 tgttgtgaggttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaa 127  Q
    |||| |||| |||||||||||||| ||||| || |||||||||| ||| |||||||| |||| |||||    
T  40689002 tgttttgagcttattttcataagttatccaggatagcttatgaacacagcttatagcttatatgaaaa 40689069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 43648284 - 43648225
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaaca 129  Q
    |||||||||||  |  ||||||| |||||||||||||| |||||| ||||||||||||||    
T  43648284 ttattttcatattttctccaagatagcttatgaaaacagcttatatcatatacgaaaaca 43648225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 27548300 - 27548246
Alignment:
Q  77 cataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||| |||||||| |||||||||||||| |||||||| || | |||||||||    
T  27548300 cataagttatccaagatagcttatgaaaacagcttatagcttaaatgaaaacaat 27548246  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 48470093 - 48470027
Alignment:
Q  65 tgaggttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    |||| |||| ||||||||| || ||| | |||||||||||||||||||||  |||||| ||||||||    
T  48470093 tgagcttatgttcataagttattcaaaatagcttatgaaaacaacttatattatatacaaaaacaat 48470027  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 17944373 - 17944430
Alignment:
Q  74 tttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    |||||||| | |||||||| | ||||||||||||||||| | ||||||| ||||||||    
T  17944373 tttcataaattatccaagataacttatgaaaacaacttacaacatatacaaaaacaat 17944430  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 19022611 - 19022672
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||||||||||||  ||||| | ||||||| ||||||||||||||||| ||  ||||||||    
T  19022611 ttattttcataagttctccaatatagcttataaaaacaacttatagcatttattaaaacaat 19022672  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 47177680 - 47177619
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    |||||||||||| |  ||||||| ||||| |||||||| |||||||| |||| |||||||||    
T  47177680 ttattttcataaattctccaagatagcttttgaaaacagcttatagcttatatgaaaacaat 47177619  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 47130811 - 47130855
Alignment:
Q  70 ttattttcataagtaatccaagacagcttatgaaaacaacttata 114  Q
    ||||||||| ||||  ||||||| |||||||||||||||||||||    
T  47130811 ttattttcacaagttctccaagatagcttatgaaaacaacttata 47130855  T

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Target: scaffold0528 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0528
Description:

Target: scaffold0528; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 97 - 131
Target Start/End: Original strand, 1025 - 1059
Alignment:
Q  97 ttatgaaaacaacttatagcatatacgaaaacaat 131  Q
    ||||| |||||||||||||||||||||||||||||    
T  1025 ttatggaaacaacttatagcatatacgaaaacaat 1059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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