View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19010_low_3 (Length: 478)

Name: NF19010_low_3
Description: NF19010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19010_low_3
NF19010_low_3
[»] chr5 (1 HSPs)
chr5 (18-464)||(34936423-34936870)
[»] chr1 (5 HSPs)
chr1 (139-261)||(17404391-17404513)
chr1 (322-428)||(17404622-17404728)
chr1 (327-417)||(32730188-32730278)
chr1 (137-259)||(32729950-32730072)
chr1 (144-208)||(16586889-16586953)
[»] chr7 (6 HSPs)
chr7 (327-418)||(18132650-18132741)
chr7 (327-418)||(18144437-18144528)
chr7 (138-203)||(18132910-18132975)
chr7 (138-203)||(18144697-18144762)
chr7 (159-211)||(21376409-21376461)
chr7 (279-320)||(29802043-29802084)
[»] chr2 (1 HSPs)
chr2 (276-315)||(20213787-20213826)
[»] chr3 (2 HSPs)
chr3 (44-86)||(42679286-42679328)
chr3 (276-320)||(53505105-53505149)
[»] chr8 (1 HSPs)
chr8 (279-320)||(18008986-18009027)
[»] chr6 (1 HSPs)
chr6 (276-320)||(2013467-2013511)
[»] chr4 (1 HSPs)
chr4 (276-320)||(54846172-54846216)


Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 464
Target Start/End: Original strand, 34936423 - 34936870
Alignment:
Q  18 atcataagctaaataaaagatttttatcttcaaccatcaaaatgataaacgtttaactttatcgaacaaagttaaattagaaatttccatctttaaccac 117  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34936423 atcataagctaaattaaagatttttatcttcaaccatcaaaatgataaacgtttaactttatcgaacaaagttaaattagaaatttccatcttcaaccac 34936522  T
Q  118 caaaatgtaaacatatgactttgttctggcatgataactacgttggggaaattccgttaaggattaaatttccccgcctatttgatttggccgtgaacta 217  Q
    |||||| ||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  34936523 caaaatataaacatatgactttgttctggcatgataactgtgttggggaaattcggttaaggattaaatttccccgcctatttgatttggccgtgaacca 34936622  T
Q  218 ggagaacacagtggaggagatggagaggctagggtgggcggatgatgtgggggtgtgtgagagtgtgagggagtgttctgctttgttacataacattgct 317  Q
    ||||||||| |||||||||||||||||||||||             ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34936623 ggagaacacggtggaggagatggagaggctagg-------------gtgggggggtgtgagagtgtgagggagtgttctgctttgttacataacattgct 34936709  T
Q  318 ttgt--------------acaagtggaagtggttgcttgatcccaatcatcgttactcggtgcgagctgtctatcgcttttttactacgaccgatgaaca 403  Q
    ||||              ||||||||||||||||||||||||| |||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  34936710 ttgtagagcatgttcttgacaagtggaagtggttgcttgatcctaatcattgttactcagtgcgaggtgtctatcgcttttttactacgaccgatgaaca 34936809  T
Q  404 tgtggttaggaatcttgctgatgacgttaggcacaagcatatctcttcgaaggtatctctg 464  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  34936810 tgtggttaggaatcttgttaatgacgttaggcacaagcatatctcttcgaaggtatctctg 34936870  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 139 - 261
Target Start/End: Original strand, 17404391 - 17404513
Alignment:
Q  139 tgttctggcatgataactacgttggggaaattccgttaaggattaaatttccccgcctatttgatttggccgtgaactaggagaacacagtggaggagat 238  Q
    ||||||||||||||| ||  ||||||| |||| |||| ||||  |||||||||||||||||||||| |||||||||| || ||  | | |||||||||||    
T  17404391 tgttctggcatgatagctgggttgggggaatttcgttgaggaacaaatttccccgcctatttgattcggccgtgaaccagaagtcctcggtggaggagat 17404490  T
Q  239 ggagaggctagggtgggcggatg 261  Q
    ||||||| ||||||||| |||||    
T  17404491 ggagaggttagggtgggtggatg 17404513  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 322 - 428
Target Start/End: Original strand, 17404622 - 17404728
Alignment:
Q  322 acaagtggaagtggttgcttgatcccaatcatcgttactcggtgcgagctgtctatcgcttttttactacgaccgatgaacatgtggttaggaatcttgc 421  Q
    |||||||||| |||||||||||||    |||| |||||||||||||||  || |||| ||||||||||||||| |||| || | ||||||||||||| ||    
T  17404622 acaagtggaaatggttgcttgatctttttcatggttactcggtgcgaggcgtatatcacttttttactacgacagatgtacctatggttaggaatctcgc 17404721  T
Q  422 tgatgac 428  Q
    |||||||    
T  17404722 tgatgac 17404728  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 327 - 417
Target Start/End: Original strand, 32730188 - 32730278
Alignment:
Q  327 tggaagtggttgcttgatcccaatcatcgttactcggtgcgagctgtctatcgcttttttactacgaccgatgaacatgtggttaggaatc 417  Q
    ||||| |||||||| ||||| | |||| ||||||||||||||| ||| ||||||||||||||||| || |||||||  |||||||||||||    
T  32730188 tggaaatggttgctcgatcctattcatggttactcggtgcgaggtgtatatcgcttttttactacaactgatgaacccgtggttaggaatc 32730278  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 259
Target Start/End: Original strand, 32729950 - 32730072
Alignment:
Q  137 tttgttctggcatgataactacgttggggaaattccgttaaggattaaatttccccgcctatttgatttggccgtgaactaggagaacacagtggaggag 236  Q
    |||||||||||| || ||||  || |||||||||| ||| | ||  |||||||| |||||||||||||||||||||||  |||||  |   ||||| |||    
T  32729950 tttgttctggcacgacaactgggtcggggaaattcagttgatgaacaaatttcctcgcctatttgatttggccgtgaatcaggagtccttggtggatgag 32730049  T
Q  237 atggagaggctagggtgggcgga 259  Q
    |||  |||| |||||||||||||    
T  32730050 atgttgaggttagggtgggcgga 32730072  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 16586889 - 16586953
Alignment:
Q  144 tggcatgataactacgttggggaaattccgttaaggattaaatttccccgcctatttgatttggc 208  Q
    ||||||||||| |  || ||||||||||| ||  ||||||||||||||||||| |||||| ||||    
T  16586889 tggcatgataattgggtaggggaaattcctttgcggattaaatttccccgcctttttgatctggc 16586953  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 327 - 418
Target Start/End: Complemental strand, 18132741 - 18132650
Alignment:
Q  327 tggaagtggttgcttgatcccaatcatcgttactcggtgcgagctgtctatcgcttttttactacgaccgatgaacatgtggttaggaatct 418  Q
    ||||| |||||||| ||||| | |||  ||||||||||||||| |||||| |||||||||||  | || |||| || |||||||||||||||    
T  18132741 tggaaatggttgctcgatcctattcacggttactcggtgcgaggtgtctaccgcttttttacggcaacagatgtacctgtggttaggaatct 18132650  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 327 - 418
Target Start/End: Complemental strand, 18144528 - 18144437
Alignment:
Q  327 tggaagtggttgcttgatcccaatcatcgttactcggtgcgagctgtctatcgcttttttactacgaccgatgaacatgtggttaggaatct 418  Q
    ||||| |||||||| ||||| | |||  ||||||||||||||| |||||| |||||||||||  | || |||| || |||||||||||||||    
T  18144528 tggaaatggttgctcgatcctattcacggttactcggtgcgaggtgtctaccgcttttttacggcaacagatgtacctgtggttaggaatct 18144437  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 18132975 - 18132910
Alignment:
Q  138 ttgttctggcatgataactacgttggggaaattccgttaaggattaaatttccccgcctatttgat 203  Q
    |||||||||||||||||||  || |||||||||||||  |||| ||||||||| || |||||||||    
T  18132975 ttgttctggcatgataactgggtgggggaaattccgtcgaggaataaatttcctcgactatttgat 18132910  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 18144762 - 18144697
Alignment:
Q  138 ttgttctggcatgataactacgttggggaaattccgttaaggattaaatttccccgcctatttgat 203  Q
    |||||||||||||||||||  || |||||||||||||  |||| ||||||||| || |||||||||    
T  18144762 ttgttctggcatgataactgggtgggggaaattccgtcgaggaataaatttcctcgactatttgat 18144697  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 21376461 - 21376409
Alignment:
Q  159 gttggggaaattccgttaaggattaaatttccccgcctatttgatttggccgt 211  Q
    ||||||||||||||| |||   |||||||||||||||||||||||||| ||||    
T  21376461 gttggggaaattccgctaaaacttaaatttccccgcctatttgatttgtccgt 21376409  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 320
Target Start/End: Original strand, 29802043 - 29802084
Alignment:
Q  279 agtgtgagggagtgttctgctttgttacataacattgctttg 320  Q
    |||||||||||||||| |||||||||| ||||||||| ||||    
T  29802043 agtgtgagggagtgttatgctttgttaaataacattgttttg 29802084  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 315
Target Start/End: Complemental strand, 20213826 - 20213787
Alignment:
Q  276 gagagtgtgagggagtgttctgctttgttacataacattg 315  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  20213826 gagagtctgagggagtgttctgctttgttacataacattg 20213787  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 42679286 - 42679328
Alignment:
Q  44 tcttcaaccatcaaaatgataaacgtttaactttatcgaacaa 86  Q
    |||||||||||||||| |||||||| |||||||||||||||||    
T  42679286 tcttcaaccatcaaaaagataaacgcttaactttatcgaacaa 42679328  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 320
Target Start/End: Original strand, 53505105 - 53505149
Alignment:
Q  276 gagagtgtgagggagtgttctgctttgttacataacattgctttg 320  Q
    ||||||||||||||||||| ||||||||||| |||||||| ||||    
T  53505105 gagagtgtgagggagtgttgtgctttgttacttaacattgttttg 53505149  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 320
Target Start/End: Original strand, 18008986 - 18009027
Alignment:
Q  279 agtgtgagggagtgttctgctttgttacataacattgctttg 320  Q
    |||||| ||||||| |||||||||||||||||||||| ||||    
T  18008986 agtgtgcgggagtgctctgctttgttacataacattgttttg 18009027  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 320
Target Start/End: Original strand, 2013467 - 2013511
Alignment:
Q  276 gagagtgtgagggagtgttctgctttgttacataacattgctttg 320  Q
    |||||| ||||||||||||||| ||||||||||||| ||| ||||    
T  2013467 gagagtatgagggagtgttctgttttgttacataacgttgttttg 2013511  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 320
Target Start/End: Complemental strand, 54846216 - 54846172
Alignment:
Q  276 gagagtgtgagggagtgttctgctttgttacataacattgctttg 320  Q
    |||||||||||||||||||||| |||  |||||||||||| ||||    
T  54846216 gagagtgtgagggagtgttctgttttactacataacattgttttg 54846172  T

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