View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19012_high_10 (Length: 384)
Name: NF19012_high_10
Description: NF19012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19012_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 14 - 369
Target Start/End: Original strand, 6816374 - 6816738
Alignment:
| Q |
14 |
cacagatgctatagatgtgaagagtgtagtcaaccctacaagaagccttcttggtaagtccacaacaaaatctttttcttcaaaccgagatgtgagtatc |
113 |
Q |
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| T |
6816374 |
cacagatgctatagatgtgaagagtgtagtcaaccctacaagaagccttcttggtaagtccacaacaaaatctttttcttcaaacctagatgtgagtatc |
6816473 |
T |
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| Q |
114 |
gnnnnnnncgaaacaagggctgtgacagagaagcaaagtgcaacaagtgatgctgcagcatagagtttgaaagcaggttcttttataaatagtggtatac |
213 |
Q |
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| T |
6816474 |
gaaagaaacgaaacaagagctgtgacagagaagcaaagtgcaacaagtgatgctgcagcatagagtttgtaagcaggttctttcataaatagtggtatac |
6816573 |
T |
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| Q |
214 |
cattattttgattaggaccacctgggatagctgttgaggttgagaatgcaacagc---------tgctgctaccaccgagcatgattctgcggttttggt |
304 |
Q |
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| T |
6816574 |
cattattttgattaggaccacctgggatagatgttgaggttgtgaatgcaacagctgcagcaagtgctgctaccaccgagcatgattctgcggttttggt |
6816673 |
T |
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| Q |
305 |
gagccatttactaccttcttttacaagtggtgcgtgtgtctcaatgaagacttgctttgctgttt |
369 |
Q |
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| T |
6816674 |
gagccatttactaccttcttttacaagtggtgcgtgtgtctcaatgaagacttgctttgctgttt |
6816738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 369
Target Start/End: Original strand, 6830802 - 6831166
Alignment:
| Q |
14 |
cacagatgctatagatgtgaagagtgtagtcaaccctacaagaagccttcttggtaagtccacaacaaaatctttttcttcaaaccgagatgtgagtatc |
113 |
Q |
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| T |
6830802 |
cacagatgctatagatgtgaagagtgtagtcaaccctacaagaagctttcttggtaagtcaataacaaaatctttttcttcaaaccgagatgtgagtatg |
6830901 |
T |
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| Q |
114 |
gnnnnnnncgaaacaagggctgtgacagagaagcaaagtgcaacaagtgatgctgcagcatagagtttgaaagcaggttcttttataaatagtggtatac |
213 |
Q |
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| | |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| | || || | |||||| |||| |
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| T |
6830902 |
gaaagaaacaaaacaagggctgtgacagaggagcaaagtgcaacaagtgatgctacagcatagagtttgaaagcaggcttttctagcagtagtggcatac |
6831001 |
T |
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| Q |
214 |
cattattttgattaggaccacctgggatagctgttgaggttgagaatgcaacag---------ctgctgctaccaccgagcatgattctgcggttttggt |
304 |
Q |
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| T |
6831002 |
cggattcttgatcaggaccacctgggatagctgtcgaggttgtgaatgcaacagttgcaacaagtgctgctaccactgagcaagattctgcggttttggt |
6831101 |
T |
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| Q |
305 |
gagccatttactaccttcttttacaagtggtgcgtgtgtctcaatgaagacttgctttgctgttt |
369 |
Q |
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| T |
6831102 |
gagccatttactaccttcttttgtaagtggtgcgtgtgtatcaatgaagacttgctttgctgttt |
6831166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 15 - 369
Target Start/End: Original strand, 6808414 - 6808774
Alignment:
| Q |
15 |
acagatgctatagatgtgaagagtgtagtcaaccctacaagaagccttcttggtaagtccacaacaaaatctttttcttcaaaccgagatgtgagtatcg |
114 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||| |||||| ||||||| ||||||||| || ||||||| |
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| T |
6808414 |
acagatgctatagatgtgaagagtgtagtcaaccctagaagaagcttttttggtaagtccacaagaaaatccttttcttgaaaccgagacgttagtatcg |
6808513 |
T |
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| Q |
115 |
nnnnnnncgaaacaagggctgtgacagagaagcaaagtgcaacaagtgatgctgcagcatagagtttgaaagcaggttcttttataaatagtggtatacc |
214 |
Q |
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| T |
6808514 |
aaagaaacataacaagagccatgacagaggagcaaagtgcaacaagtgatgctacagcatatagtttgaaaacaggcttttttaggaatattggtatacc |
6808613 |
T |
|
| Q |
215 |
attattttgattaggaccacctgggatagctgttgaggttgagaatgcaaca---gc------tgctgctaccaccgagcatgattctgcggttttggtg |
305 |
Q |
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| T |
6808614 |
atcatcatcataa---ccacctgggatagatgttgaggttgtgaatgcaacacttgcaacaagtgctgctaccactgagcatgattctgcagttttggtg |
6808710 |
T |
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| Q |
306 |
agccatttactaccttcttttacaagtggtgcgtgtgtctcaatgaagacttgctttgctgttt |
369 |
Q |
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|||||||||| |||||||||||||||| || ||||||| ||||||||||| ||||||||||||| |
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| T |
6808711 |
agccatttaccaccttcttttacaagttgtccgtgtgtgtcaatgaagacctgctttgctgttt |
6808774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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