View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19012_high_13 (Length: 350)
Name: NF19012_high_13
Description: NF19012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19012_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 23769782 - 23769448
Alignment:
| Q |
1 |
ggtctagagaggtatttttagtgatcctatgttttacattcatcaataaggctttacttaccttctgatcgaattatgaattacgagaactccttttccc |
100 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23769782 |
ggtctagagaggtatttttagtgaccctatgtttcacattcatcaataagactttacttaccttctgatcgaattatgaattacgagaactccttttccc |
23769683 |
T |
|
| Q |
101 |
tgaaaaatcagatggttnnnnnnnncttaaataatgtatctatatttgttttctcgaaactaacgtatctatttatccatcaattaagtgaatattctta |
200 |
Q |
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||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23769682 |
tgaaaaatcagatggttaaaaaaaacttaaataatgcatctatatttgttttctcgaaactaacgtatctatttatccatcaattaagtgaatattctta |
23769583 |
T |
|
| Q |
201 |
aaactcacaagcttaatttgatttgatttttctatatagggctagaagatatggatggcaagatacttatgtgttcacaaaggcaatgggagaaatgatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23769582 |
aaactcacaagcttaatttgatttgatttttctatatagggctagaagatatggatggcaagatacttatgtgttcacaaaggcaatgggagaaatgatg |
23769483 |
T |
|
| Q |
301 |
attgacaaattgagggaagatattccagttgttgt |
335 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
23769482 |
attgacaaattgagggaagatattccagttgttgt |
23769448 |
T |
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