View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19012_high_5 (Length: 425)
Name: NF19012_high_5
Description: NF19012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19012_high_5 |
 | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0004 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 14 - 408
Target Start/End: Original strand, 344103 - 344498
Alignment:
| Q |
14 |
ataatactgaacgtgtgtatcaaatcaaggtcatgaagcatgacaaatttcatcaaagaaaaggaaatgaccaaa-tcatctgtcaagttagttagtagt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
344103 |
ataatactgaacgtgtgtatcaaatcaaggtcatgaagcatgacaaatttcatcaaagaaaaggaaatgaccaaaatcatctgtcaagttagttagtagt |
344202 |
T |
|
| Q |
113 |
tccaaaatatctggttcctcctataatgttttttaagatatttctgtatcaaaatcctataactccatttctgttgttgtgtcttgtattccaaaaacgc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
344203 |
tccaaaatatctggttcctcctataatgttttttaagatatttctgtatcaaaatcctataactccatttctgttgttgtgtcttgtattccaaaaacgc |
344302 |
T |
|
| Q |
213 |
ctccgaactcaaatgaaagtcacctttacctaaaacctcaaacacaaacggatctgtaaacaatctcgtacaatcatccacatccattttattcaaaaca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
344303 |
ctccgaactcaaatgaaagtcacctttacctaaaacctcaaacacaaacggatctgtaaacaatctcgtacaatcatccacatccattttattcaaaaca |
344402 |
T |
|
| Q |
313 |
aactccaaattccttccaagccttctatccaagtatgcctccacaacacaaccgtaagtaaccaaatcaggaacaaccttttcactcctcatatgt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
344403 |
aactccaaattccttccaagccttctatccaagtatgcctccacaacacaaccgtaagtaaccaaatcaggaacaaccttttcactcctcatatgt |
344498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 14 - 408
Target Start/End: Complemental strand, 20000118 - 19999724
Alignment:
| Q |
14 |
ataatactgaacgtgtgtatcaaatcaaggtcatgaagcatgacaaatttcatcaaagaaaaggaaatgaccaaa-tcatctgtcaagttagttagtagt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20000118 |
ataatactgaacgtgtgtatcaaatcaaggtcatgaagcatgacaaatttcatcaa-gaaaaggaaatgaccaaaatcatctgtcaagttagttagtagt |
20000020 |
T |
|
| Q |
113 |
tccaaaatatctggttcctcctataatgttttttaagatatttctgtatcaaaatcctataactccatttctgttgttgtgtcttgtattccaaaaacgc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20000019 |
tccaaaatatctggttcctcctataatgttttttaagatatttctgtatcaaaatcctataactccatttctgttgttgtgtcttgtattccaaaaacgc |
19999920 |
T |
|
| Q |
213 |
ctccgaactcaaatgaaagtcacctttacctaaaacctcaaacacaaacggatctgtaaacaatctcgtacaatcatccacatccattttattcaaaaca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19999919 |
ctccgaactcaaatgaaagtcacctttacctaaaacctcaaacacaaacggatctgtaaacaatctcggacaatcatccacatccattttattcaaaaca |
19999820 |
T |
|
| Q |
313 |
aactccaaattccttccaagccttctatccaagtatgcctccacaacacaaccgtaagtaaccaaatcaggaacaaccttttcactcctcatatgt |
408 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19999819 |
aactccaaattccttccaagctttctatccaagtaagcctccacaacacaaccataagtaaccaaatcaggaacaacattttcactcctcatatgt |
19999724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 91 - 408
Target Start/End: Complemental strand, 28824869 - 28824552
Alignment:
| Q |
91 |
atctgtcaagttagttagtagttccaaaatatctggttcctcctataatgttttttaagatatttctgtatcaaaatcctataactccatttctgttgtt |
190 |
Q |
| |
|
|||||| || ||||||| |||||||||||||| |||| | ||| || ||||| ||||||||||||| |||||||| |||||||||||| | || |||| |
|
|
| T |
28824869 |
atctgttaaattagttattagttccaaaatatttggtccatccgatgctgtttcttaagatatttctttatcaaaaccctataactccactcatgctgtt |
28824770 |
T |
|
| Q |
191 |
gtgtcttgtattccaaaaacgcctccgaactcaaatgaaagtcacctttacctaaaacctcaaacacaaacggatctgtaaacaatctcgtacaatcatc |
290 |
Q |
| |
|
|||||||| |||||| ||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| | || ||||||||| |
|
|
| T |
28824769 |
gtgtcttgcattccataaatgcctcggaactcaagtgaaagtcacctttacctaaaacctcaaacacaaacggatccgtcaacaaccacggacaatcatc |
28824670 |
T |
|
| Q |
291 |
cacatccattttattcaaaacaaactccaaattccttccaagccttctatccaagtatgcctccacaacacaaccgtaagtaaccaaatcaggaacaacc |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || || ||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
28824669 |
cacatccattttattcaaaacaaactccaaattccttccatgccttctatccaagtaagcatcgacaacacaaccataagtaaccaaatcagaaacaacc |
28824570 |
T |
|
| Q |
391 |
ttttcactcctcatatgt |
408 |
Q |
| |
|
|| ||||| ||||||||| |
|
|
| T |
28824569 |
ttctcacttctcatatgt |
28824552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 282 - 407
Target Start/End: Complemental strand, 12088805 - 12088680
Alignment:
| Q |
282 |
acaatcatccacatccattttattcaaaacaaactccaaattccttccaagccttctatccaagtatgcctccacaacacaaccgtaagtaaccaaatca |
381 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||||||| | |||| |||| || ||||||||||||| ||||||| ||||||| |
|
|
| T |
12088805 |
acaatcatcaacatccattttattcaaaacaaactcaaaattccttccatatttaatatctgagtaagcatccacaacacaacaataagtaagcaaatca |
12088706 |
T |
|
| Q |
382 |
ggaacaaccttttcactcctcatatg |
407 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
12088705 |
ggaacaaccttttcactcctcatatg |
12088680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 12088890 - 12088834
Alignment:
| Q |
159 |
tatcaaaatcctataactccatttctgttgttgtgtcttgtattccaaaaacgcctc |
215 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
12088890 |
tatcaaaaccctacaactccatttctgttgttgcgtcttgtattccaaaaatgcctc |
12088834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University