View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19012_high_6 (Length: 425)
Name: NF19012_high_6
Description: NF19012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19012_high_6 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 11 - 425
Target Start/End: Original strand, 48105903 - 48106317
Alignment:
| Q |
11 |
aagaatatctagacctgacctcatgtaagcaagatttggctggccacttgcaaaatggccttgcaatcctatggcaaataatatttcagtagcttctcca |
110 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48105903 |
aagaaaatctagacctgacctcatgtaagcaagatttggctggccacttgcaaaatggccttgcaatcctatggcaaataatatttcagtagcttctcca |
48106002 |
T |
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| Q |
111 |
tattgcataatctcctcaagttttttgagatagttgggtgggctaacaactttatctccactatattcaatagtattatactcattcataaacaatgttg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48106003 |
gattgcataatctcctcaagttttttgagatagttgggtgggctaacaactttatctccactatattcaatagtattatactcattcataaacaattttg |
48106102 |
T |
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| Q |
211 |
tttctggatcaagctcatgagcttttaaatagtataattcagatgcatttttacctagtttgtcctcataaaagtgaaaatggacattttcattcaccac |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48106103 |
tttctggatcaagctcatgagcttttaaatagtataattcagatgcattttcacctagtttgtcctcataaaagtgaaaatggacattttcattcaccac |
48106202 |
T |
|
| Q |
311 |
atcccatgcaatcaattctcctttataccttttaacaacagattcgattcnnnnnnncgcggctttgcgcaattcatcgggcgataaatacttaacccat |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48106203 |
atcccatgcaatcaattctcctttataccttttaacaacagattcgattctttttttcgcggctttgcgcaattcatcgggcgataaatacttaacccat |
48106302 |
T |
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| Q |
411 |
tcaggttgatatttt |
425 |
Q |
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| T |
48106303 |
tcaggttgatatttt |
48106317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 11 - 341
Target Start/End: Original strand, 48062268 - 48062598
Alignment:
| Q |
11 |
aagaatatctagacctgacctcatgtaagcaagatttggctggccacttgcaaaatggccttgcaatcctatggcaaataatatttcagtagcttctcca |
110 |
Q |
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| T |
48062268 |
aagaagatcaagacctgacctcatatatgcaatgtttggcacgccacttgaaaaatggcactgcaaccctatggccaatgatattccagcatttcctgga |
48062367 |
T |
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| Q |
111 |
tattgcataatctcctcaagttttttgagatagttgggtgggctaacaactttatctccactatattcaatagtattatactcattcataaacaatgttg |
210 |
Q |
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| T |
48062368 |
aactgctgaatctccttaagcttccggatataattggttgggctggcatccttatcaccactgtattcgatagtgttatactcattcatgaaca-tgttc |
48062466 |
T |
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| Q |
211 |
tttctgg-atcaagctcatgagcttttaaatagtataattcagatgcatttttacctagtttgtcctcataaaagtgaaaatggacattttcattcacca |
309 |
Q |
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|| ||| |||||| | | |||| | ||||||||| | |||| |||||||| || || ||||||||| ||||||| || |||||||| ||||| |||| |
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| T |
48062467 |
gttgtgggatcaagatggtaagctgctgaatagtatactgcagaggcatttttgccgaggttgtcctcaaaaaagtggaagtggacattctcatttacca |
48062566 |
T |
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| Q |
310 |
catcccatgcaatcaattctcctttatacctt |
341 |
Q |
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| T |
48062567 |
cgtcccatgcaatcaattgtcctttatacctt |
48062598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 341
Target Start/End: Original strand, 48099410 - 48099632
Alignment:
| Q |
119 |
aatctcctcaagttttttgagatagttgggtgggctaacaactttatctccactatattcaatagtattatactcattcataaacaatgttgtttctgga |
218 |
Q |
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|||||||| |||||| ||| ||| || |||||||| || || ||||||||| ||||||| || ||| |||||||||| |||| | | |||||||| |
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| T |
48099410 |
aatctccttaagtttcctgatataattaggtgggctgactacccgatctccacttgattcaatggtgttaaactcattcatgaacattttgatttctgga |
48099509 |
T |
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| Q |
219 |
tcaagctcatgagcttttaaatagtataattcagatgcatttttacctagtttgtcctcataaaagtgaaaatggacattttcattcaccacatcccatg |
318 |
Q |
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| T |
48099510 |
tcaagatggtaagctgttgaataatatattggcgaggcattttcgccgagtttgttctcaaaaaagtggtagtggacattctcattcacaacgtcccatg |
48099609 |
T |
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| Q |
319 |
caatcaattctcctttatacctt |
341 |
Q |
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|||||| || |||| |||||||| |
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| T |
48099610 |
caatcagttgtcctctatacctt |
48099632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 48066357 - 48066421
Alignment:
| Q |
11 |
aagaatatctagacctgacctcatgtaagcaagatttggctggccacttgcaaaatggccttgca |
75 |
Q |
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| T |
48066357 |
aagaagatctagacctgacctcatgtaagcaatgtttggcacgccgcgtgaaaaatggccttgca |
48066421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 50231032 - 50231090
Alignment:
| Q |
17 |
atctagacctgacctcatgtaagcaagatttggctggccacttgcaaaatggccttgca |
75 |
Q |
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|||||||||||||||||||||||||| |||||| ||| |||| ||||||||||||| |
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| T |
50231032 |
atctagacctgacctcatgtaagcaatgtttggcatgccgcttgacaaatggccttgca |
50231090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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