View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19012_high_9 (Length: 384)

Name: NF19012_high_9
Description: NF19012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19012_high_9
NF19012_high_9
[»] chr6 (4 HSPs)
chr6 (18-374)||(30574858-30575216)
chr6 (149-200)||(29657467-29657518)
chr6 (152-200)||(1572751-1572799)
chr6 (152-200)||(1573962-1574010)
[»] chr7 (8 HSPs)
chr7 (18-275)||(40692002-40692262)
chr7 (24-244)||(41495738-41495943)
chr7 (18-114)||(40690036-40690133)
chr7 (149-200)||(15743509-15743560)
chr7 (149-210)||(12018539-12018599)
chr7 (131-171)||(40690132-40690173)
chr7 (152-200)||(29418264-29418312)
chr7 (152-200)||(15742366-15742414)
[»] scaffold0242 (4 HSPs)
scaffold0242 (19-275)||(11538-11795)
scaffold0242 (19-275)||(6932-7189)
scaffold0242 (18-275)||(9233-9493)
scaffold0242 (69-275)||(20422-20630)
[»] chr2 (7 HSPs)
chr2 (17-273)||(3029896-3030162)
chr2 (69-276)||(19019591-19019799)
chr2 (18-276)||(4250845-4251102)
chr2 (18-63)||(19019846-19019891)
chr2 (149-200)||(4518984-4519035)
chr2 (149-200)||(44112941-44112992)
chr2 (152-193)||(44503204-44503245)
[»] chr3 (11 HSPs)
chr3 (18-275)||(19316531-19316787)
chr3 (18-275)||(19319246-19319502)
chr3 (110-253)||(44211426-44211567)
chr3 (130-253)||(54358973-54359096)
chr3 (130-253)||(54361215-54361338)
chr3 (149-200)||(30574624-30574675)
chr3 (149-200)||(6530076-6530127)
chr3 (149-199)||(30575786-30575836)
chr3 (149-200)||(6528987-6529038)
chr3 (149-200)||(43679039-43679090)
chr3 (130-202)||(41513452-41513525)
[»] chr1 (13 HSPs)
chr1 (18-276)||(44611805-44612086)
chr1 (69-243)||(21899448-21899619)
chr1 (24-253)||(41642098-41642320)
chr1 (143-246)||(14642621-14642724)
chr1 (18-63)||(21899374-21899419)
chr1 (149-200)||(44031561-44031612)
chr1 (149-200)||(28876768-28876819)
chr1 (149-200)||(37811038-37811089)
chr1 (149-192)||(19620367-19620410)
chr1 (143-205)||(44872937-44872997)
chr1 (149-192)||(51837774-51837817)
chr1 (160-251)||(36283601-36283692)
chr1 (152-200)||(51836598-51836646)
[»] chr8 (6 HSPs)
chr8 (18-243)||(30955132-30955357)
chr8 (18-243)||(30957785-30958010)
chr8 (178-243)||(40984866-40984931)
chr8 (143-190)||(36824584-36824631)
chr8 (132-171)||(40985187-40985227)
chr8 (156-198)||(31310193-31310235)
[»] chr5 (6 HSPs)
chr5 (143-246)||(41574177-41574279)
chr5 (110-251)||(15480848-15480989)
chr5 (130-253)||(14248504-14248627)
chr5 (131-193)||(27439060-27439123)
chr5 (149-193)||(41422468-41422512)
chr5 (152-200)||(14672527-14672575)
[»] chr4 (7 HSPs)
chr4 (143-202)||(42819454-42819513)
chr4 (215-255)||(26855797-26855837)
chr4 (149-193)||(30101580-30101624)
chr4 (152-200)||(56331997-56332045)
chr4 (149-200)||(30100435-30100486)
chr4 (130-189)||(26855851-26855911)
chr4 (152-200)||(48367677-48367725)
[»] scaffold0167 (1 HSPs)
scaffold0167 (131-203)||(24871-24943)


Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 30575216 - 30574858
Alignment:
Q  18 acacataggcccacttagagggagagttagttacatgagagagagaaggtagagttggttatatataggaatgagaatagagagtgagggttatctttga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30575216 acacataggcccacttagagggagagttagttacatgagagagagaaggtagagttggttatatataggaatgagaatagagagtgagggttatctttga 30575117  T
Q  118 tcattttgttcggttagaaaccttaggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctagaat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||    
T  30575116 tcattttgttcggttagaaaccttaggtttaggcagagagagaaatgtctcttctctgaggagcttttgctctggggttacaggggttttcttctacaat 30575017  T
Q  218 acatttatttttaattcaataatacagtttatttc--tgtgtgaaatcgggtctctatcagttctcaggatattttgctgcaggtgtttgttccttttgt 315  Q
    |||| |||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30575016 acatctattttcaattcaataatacagtttatttctttgtgtgaaatcgggtctctatcagttctcagtatattttgctgcaggtgtttgttccttttgt 30574917  T
Q  316 ctctattgcagatgctgatacatctgttgatgcatgctgttggtgtattgcgtcctttg 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30574916 ctctattgcagatgctgatacatctgttgatgcatgctgttggtgtattgcgtcctttg 30574858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 29657467 - 29657518
Alignment:
Q  149 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 200  Q
    |||||||||||| |||||||||| |||| ||||||||||| |||| ||||||    
T  29657467 ggcagagagagagatgtctcttctctgaggagcttttgctttgggattacag 29657518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 1572799 - 1572751
Alignment:
Q  152 agagagagaaatgtctcttcactgaagagcttttgctctggggttacag 200  Q
    ||||||||  |||||||||| |||| |||||||||||||||| ||||||    
T  1572799 agagagagtgatgtctcttctctgaggagcttttgctctgggattacag 1572751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 1574010 - 1573962
Alignment:
Q  152 agagagagaaatgtctcttcactgaagagcttttgctctggggttacag 200  Q
    ||||||||  |||||||||| |||| |||||||||||||||| ||||||    
T  1574010 agagagagtgatgtctcttctctgaggagcttttgctctgggattacag 1573962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 40692002 - 40692262
Alignment:
Q  18 acacataggcccacttagagggagagttagttacatgagagagagaaggta---gagttggttatatataggaatgagaatagagagtgagggttatctt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | |   |||||||||||||| ||||||||||||||||||||||| |||||||    
T  40692002 acacataggcccacttagagggagagttagttacatgagagagagagagaaagtgagttggttatataaaggaatgagaatagagagtgaggattatctt 40692101  T
Q  115 tgatcattttgttcggttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttcta 213  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||     
T  40692102 tgatcattttgttcggttagaaaccttagggtttaggcagagagagaaatgtctcttctctgaggagcttttgctctgggg-tacaggggttttcttctg 40692200  T
Q  214 gaatacatttatttttaattcaataatacagtttatttctgtgtgaaatcgggtctctatca 275  Q
     ||||||| |||||| |||||||||||||| ||||||||||||| || |||||| |||||||    
T  40692201 taatacatctattttcaattcaataatacaatttatttctgtgttaattcgggtttctatca 40692262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 24 - 244
Target Start/End: Original strand, 41495738 - 41495943
Alignment:
Q  24 aggcccacttagagggagagttagttacatgagagagagaaggtagagttggttatatataggaatgagaatagagagtgagggttatctttgatcattt 123  Q
    ||||||||||||||||||||||||||||| |||||| |||| || ||||| |||||||| ||||||||||| ||||||| |||| |||||||||||| ||    
T  41495738 aggcccacttagagggagagttagttacacgagagaaagaaagtggagttagttatataaaggaatgagaaaagagagtaagggatatctttgatca-tt 41495836  T
Q  124 tgttcggttagaaaccttaggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctagaatacattt 223  Q
    ||||| ||||| ||||||||| || |              | |||||| |||| |||||||||||||||||||||||||||| ||||||  ||||||| |    
T  41495837 tgttcagttag-aaccttagggtttg-------------agcctcttctctgaggagcttttgctctggggttacaggggttatcttctgtaatacatct 41495922  T
Q  224 atttttaattcaataatacag 244  Q
    ||||  ||||||| |||||||    
T  41495923 atttccaattcaacaatacag 41495943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 40690036 - 40690133
Alignment:
Q  18 acacataggcccacttagagggagagttagttacatgagagagaga--aggtagagttggttatatataggaatgagaatagagagtgagggttatctt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | || |||||||||||||| ||||||||||||||||||||||| |||||||    
T  40690036 acacataggcccacttagagggagagttagttacatgagagagagagaaagt-gagttggttatataaaggaatgagaatagagagtgaggattatctt 40690133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 15743509 - 15743560
Alignment:
Q  149 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 200  Q
    |||||||||||| |||||||||| |||| |||||||||||||||| ||||||    
T  15743509 ggcagagagagagatgtctcttctctgaggagcttttgctctgggattacag 15743560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 12018599 - 12018539
Alignment:
Q  149 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttctt 210  Q
    ||||||||||||||| ||||||  |||| ||||||||||||| |||||||||| ||||||||    
T  12018599 ggcagagagagaaatatctcttatctgaggagcttttgctct-gggttacaggagttttctt 12018539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 40690132 - 40690173
Alignment:
Q  131 ttagaaaccttagg-tttaggcagagagagaaatgtctcttc 171  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  40690132 ttagaaaccttagggtttaggcagagagagaaatgtctcttc 40690173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 29418312 - 29418264
Alignment:
Q  152 agagagagaaatgtctcttcactgaagagcttttgctctggggttacag 200  Q
    |||||||||||||||||||| |||| ||||||||||||| || ||||||    
T  29418312 agagagagaaatgtctcttctctgaggagcttttgctctaggattacag 29418264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 15742366 - 15742414
Alignment:
Q  152 agagagagaaatgtctcttcactgaagagcttttgctctggggttacag 200  Q
    ||||||||  |||||||||| |||| |||||||||||||||| ||||||    
T  15742366 agagagagtgatgtctcttctctgaggagcttttgctctgggattacag 15742414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 154; Significance: 1e-81; HSPs: 4)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 11538 - 11795
Alignment:
Q  19 cacataggcccacttagagggagagttagttacatgagagagagaaggtagagttggttatatataggaatgagaatagagagtgagggttatctttgat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  11538 cacataggcccacttagagggagagttagttacatgagagagagaaagt-gagttggttatataaaggaatgagaatagagagtgaggattatctttgat 11636  T
Q  119 cattttgttcggttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttaca-ggggttttcttctagaa 216  Q
    || ||||||| ||||  ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||| |||||||||||||  ||    
T  11637 ca-tttgttcagttaataaccttagggtttaggcagagagagaaatgtctcttctctgaggagcttttgctct-gggttacagggggttttcttctgtaa 11734  T
Q  217 tacatttatttttaattcaataatacagtttatttc--tgtgtgaaatcgggtctctatca 275  Q
    ||||| |||||| |||| |||||||| |||||||||  |||||||||||||||||||||||    
T  11735 tacatctattttcaatttaataatactgtttatttctttgtgtgaaatcgggtctctatca 11795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 6932 - 7189
Alignment:
Q  19 cacataggcccacttagagggagagttagttacatgagagagagaaggtagagttggttatatataggaatgagaatagagagtgagggttatctttgat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  6932 cacataggcccacttagagggagagttagttacatgagagagaggaagt-gagttggttatataaaggaatgagaatagagagtgaggattatctttgat 7030  T
Q  119 cattttgttcggttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttaca-ggggttttcttctagaa 216  Q
    || ||||||| ||||  ||||||| ||||| ||||||||||||||||||| ||| |||| ||||||||||||| |||||||| |||||||||||||  ||    
T  7031 ca-tttgttcagttaataaccttagggtttgggcagagagagaaatgtcttttctctgaggagcttttgctct-gggttacagggggttttcttctgtaa 7128  T
Q  217 tacatttatttttaattcaataatacagtttatttc--tgtgtgaaatcgggtctctatca 275  Q
    ||||| |||||| |||| || ||||| |||||||||  |||||||||| ||||||||||||    
T  7129 tacatctattttcaatttaaaaatactgtttatttctttgtgtgaaattgggtctctatca 7189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 9233 - 9493
Alignment:
Q  18 acacataggcccacttagagggagagttagttacatgagagagaga--aggtagagttggttatatataggaatgagaatagagagtgagggttatcttt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | || |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  9233 acacataggcccacttagagggagagttagttacatgagagagagagaaagt-gagttggttatataaaggaatgagaatagagagtgaggattatcttt 9331  T
Q  116 gatcattttgttcggttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttaca-ggggttttcttcta 213  Q
    ||||| ||||||| ||||  ||||||| ||||| ||||||||||||||||||| ||| |||| ||||||||||||| |||||||| |||||||||||||     
T  9332 gatca-tttgttcagttaataaccttagggtttgggcagagagagaaatgtcttttctctgaggagcttttgctct-gggttacagggggttttcttctg 9429  T
Q  214 gaatacatttatttttaattcaataatacagtttatttc--tgtgtgaaatcgggtctctatca 275  Q
     ||||||| |||||| |||| || ||||| |||||||||  |||||||||| ||||||||||||    
T  9430 taatacatctattttcaatttaaaaatactgtttatttctttgtgtgaaattgggtctctatca 9493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 69 - 275
Target Start/End: Original strand, 20422 - 20630
Alignment:
Q  69 gagttggttatatataggaatgagaatagagagtgagggttatctttgatcattttgttcggttagaaacctta-ggtttaggcagagagagaaatgtct 167  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||| ||||  ||||||| |||||||||||||||||||||||||    
T  20422 gagttggttatataaaggaatgagaatagagagtgaggattatctttgatca-tttgttcagttaataaccttagggtttaggcagagagagaaatgtct 20520  T
Q  168 cttcactgaagagcttttgctctggggttaca-ggggttttcttctagaatacatttatttttaattcaataatacagtttatttc--tgtgtgaaatcg 264  Q
    |||| |||| ||||||||||||| |||||||| |||||||||||||  ||||||| |||||| |||| |||||||| |||||||||  ||||||||||||    
T  20521 cttctctgaggagcttttgctct-gggttacagggggttttcttctgtaatacatctattttcaatttaataatactgtttatttctttgtgtgaaatcg 20619  T
Q  265 ggtctctatca 275  Q
    |||||||||||    
T  20620 ggtctctatca 20630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 150; Significance: 3e-79; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 3030162 - 3029896
Alignment:
Q  17 cacacataggcccacttagagggagagttagttacatgagagagaga-----------ag-gtagagttggttatatataggaatgagaatagagagtga 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||           || || |||||||||||||| |||||||||||| ||||||||    
T  3030162 cacacataggcccacttagagggagagttagttacatgagagagagagagagagagagagagtggagttggttatataaaggaatgagaattgagagtga 3030063  T
Q  105 gggttatctttgatcattttgttcggttagaaaccttagg-tttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacagggg 203  Q
    ||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||  |||| ||||||||||| ||||||||||||||    
T  3030062 gggatatctttgatcattttgttcagttagaaaccttagggtttaggcagagagagaaatgtctcttatctgaggagcttttgctatggggttacagggg 3029963  T
Q  204 ttttcttctagaatacatttatttttaattcaataatacagtttatttctgtgtgaaatcgggtctctat 273  Q
    |||||||||  ||||||| |||||| |||||   ||||||||||||||||||||||||||||||||||||    
T  3029962 ttttcttctgtaatacatctattttcaattc---aatacagtttatttctgtgtgaaatcgggtctctat 3029896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 69 - 276
Target Start/End: Complemental strand, 19019799 - 19019591
Alignment:
Q  69 gagttggttatatataggaatgagaatagagagtgagggttatctttgatcattttgttcggttagaaaccttagg-tttaggcagagagagaaatgtct 167  Q
    |||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19019799 gagttggttatataaagaaatgagaatagagagtgaggattatctttgatcattttgttcggttagaaaccttagggtttaggcagagagagaaatgtct 19019700  T
Q  168 cttcactgaagagcttttgctctggggttacaggggttttcttctagaatacatttatttttaattcaataatacagtttatttctgtgtgaaatcgggt 267  Q
    |||| |||| | ||||||||| |||||||||||||| | ||||||  ||||||| |||| | ||||||||||||||||||||||||||||||||||||||    
T  19019699 cttctctgaggggcttttgctatggggttacagggggtctcttctgtaatacatctattgtcaattcaataatacagtttatttctgtgtgaaatcgggt 19019600  T
Q  268 ctctatcag 276  Q
    |||||||||    
T  19019599 ctctatcag 19019591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 4250845 - 4251102
Alignment:
Q  18 acacataggcccacttagagggagagttagttacatgagagagaga---aggtagag---ttggttatatataggaatgagaatagagagtgagggttat 111  Q
    |||||| |||||||||||||||||||||||||||||||||||||||   ||  || |   ||||||||||| ||||||||||||||||||||||| ||||    
T  4250845 acacattggcccacttagagggagagttagttacatgagagagagagagagaaagtgagtttggttatataaaggaatgagaatagagagtgaggattat 4250944  T
Q  112 ctttgatcattttgttcggttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttctt 210  Q
    ||| ||||||||||||| ||||| ||||||| ||||| ||||||||||| ||||||||||| |||| ||| |||||||         |||||||| ||||    
T  4250945 cttggatcattttgttcagttag-aaccttagggtttgggcagagagaggaatgtctcttctctgaggagtttttgct---------caggggttatctt 4251034  T
Q  211 ctagaatacatttatttttaattcaataatacagtttatt--tctgtgtgaaatcgggtctctatcag 276  Q
    ||  ||||||| ||||||  ||||||||||||| ||||||  ||||||| || |||||| ||||||||    
T  4251035 ctgtaatacatctattttccattcaataatacaatttatttgtctgtgttaattcgggtttctatcag 4251102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 19019891 - 19019846
Alignment:
Q  18 acacataggcccacttagagggagagttagttacatgagagagaga 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  19019891 acacataggcccacttagagggagagttagttacatgagagagaga 19019846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 4518984 - 4519035
Alignment:
Q  149 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 200  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  4518984 ggcagagagagaaatgtctcttctctgaggagcttttgctctgggattacag 4519035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 44112992 - 44112941
Alignment:
Q  149 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 200  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||| ||||||    
T  44112992 ggcagagagagaaatgtctcttctctgaggagctgttgctctgggattacag 44112941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 44503204 - 44503245
Alignment:
Q  152 agagagagaaatgtctcttcactgaagagcttttgctctggg 193  Q
    ||||||||| |||||||||| |||||||||||||||||||||    
T  44503204 agagagagagatgtctcttctctgaagagcttttgctctggg 44503245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 19316531 - 19316787
Alignment:
Q  18 acacataggcccacttagagggagagttagttacatgagagagagaaggtagagttggttatatataggaatgagaatagagagtgagggttatc-tttg 116  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||| ||||||||||||  ||||||||||||||| ||||    
T  19316531 acacataggcccacttagagggagagttagttacatcagagagagaaagtggagttggttatataaaggaatgagaat--agagtgagggttatcttttg 19316628  T
Q  117 atcattttgttcggttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctaga 215  Q
    |||| ||||||| ||||| ||||||| ||||| ||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||| ||||||  |    
T  19316629 atca-tttgttcagttag-aaccttagggtttgggcagagagagaaatgtctcttctctgaggagcttttgctct-gggttacaggggttatcttctgta 19316725  T
Q  216 atacatttatttttaattcaataatacagtttatt--tctgtgtgaaatcgggtctctatca 275  Q
    ||||||  ||||| || |||| ||| |||||||||  |||||||||||| ||||||||||||    
T  19316726 atacatcaattttcaactcaagaatgcagtttatttctctgtgtgaaattgggtctctatca 19316787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 19319246 - 19319502
Alignment:
Q  18 acacataggcccacttagagggagagttagttacatgagagagagaaggtagagttggttatatataggaatgagaatagagagtgagggttatctttga 117  Q
    |||||||||| ||||||||||||||||||||||||| | |||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  19319246 acacataggctcacttagagggagagttagttacatcaaagagagaaagtggagttggttatataaaggaatgagaatagagagtgaggtttatctttga 19319345  T
Q  118 tcattttgttcggttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctagaa 216  Q
    ||||||| ||   |||  ||||||| ||||| |||  |||||||||||||||||| |||| ||||||||||||| |||||||||||||| ||||||  ||    
T  19319346 tcatttttttttttta-taaccttagggtttgggc--agagagaaatgtctcttctctgaggagcttttgctct-gggttacaggggttatcttctgtaa 19319441  T
Q  217 tacatttatttttaattcaataatacagtttatttc--tgtgtgaaatcgggtctctatca 275  Q
    |||||  ||||| || |||||||| |||||||||||  |||||||||| ||||||||||||    
T  19319442 tacatcaattttcaactcaataatgcagtttatttctttgtgtgaaattgggtctctatca 19319502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 110 - 253
Target Start/End: Original strand, 44211426 - 44211567
Alignment:
Q  110 atctttgatcattttgttcggttagaaaccttaggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttct 209  Q
    ||||||||||||||||||| ||||||| ||||||| || ||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||| |||    
T  44211426 atctttgatcattttgttcagttagaa-ccttagggttgggcagagagagaaatgtctcttctctgaggagcttttgctct-gggttacaggggttatct 44211523  T
Q  210 tctagaatacatttatttttaattcaataatacagtttatttct 253  Q
    |||  || |||| |||||| |||||||||||||| |||||||||    
T  44211524 tctgtaacacatctattttcaattcaataatacaatttatttct 44211567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 130 - 253
Target Start/End: Original strand, 54358973 - 54359096
Alignment:
Q  130 gttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctagaatacatttatttt 228  Q
    ||||| ||||||| ||||||||||||||||||||  ||||||| |||| |||||| |||||| |||||||| || || ||||||  ||||||| ||||||    
T  54358973 gttaggaaccttatggtttaggcagagagagaaacatctcttctctgaggagcttctgctctagggttaca-ggattatcttctgtaatacatctatttt 54359071  T
Q  229 taattcaataatacagtttatttct 253  Q
     |||||||||||||| |||||||||    
T  54359072 caattcaataatacaatttatttct 54359096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 130 - 253
Target Start/End: Original strand, 54361215 - 54361338
Alignment:
Q  130 gttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctagaatacatttatttt 228  Q
    ||||| ||||||| ||||||||||||||||||||  ||||||| |||| |||||| |||||| |||||||| || || ||||||  ||||||| ||||||    
T  54361215 gttaggaaccttatggtttaggcagagagagaaacatctcttctctgaggagcttctgctctagggttaca-ggattatcttctgtaatacatctatttt 54361313  T
Q  229 taattcaataatacagtttatttct 253  Q
     |||||||||||||| |||||||||    
T  54361314 caattcaataatacaatttatttct 54361338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 30574675 - 30574624
Alignment:
Q  149 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 200  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  30574675 ggcagagagagaaatgtctcttctctgaggagcttttgctctgggattacag 30574624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 6530127 - 6530076
Alignment:
Q  149 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 200  Q
    |||||| |||||||||||||||| |||| |||||||||||||||| ||||||    
T  6530127 ggcagaaagagaaatgtctcttctctgaggagcttttgctctgggattacag 6530076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 199
Target Start/End: Complemental strand, 30575836 - 30575786
Alignment:
Q  149 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttaca 199  Q
    ||||||||||||||||||||||| |||| ||||||||||| |||| |||||    
T  30575836 ggcagagagagaaatgtctcttctctgaggagcttttgctttgggattaca 30575786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 6529038 - 6528987
Alignment:
Q  149 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 200  Q
    |||||| ||||||||||||||||  ||| |||||||||||||||| ||||||    
T  6529038 ggcagaaagagaaatgtctcttctttgaggagcttttgctctgggattacag 6528987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 43679039 - 43679090
Alignment:
Q  149 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 200  Q
    ||||||||||||||||||||||| |||| |||| |||||||| || ||||||    
T  43679039 ggcagagagagaaatgtctcttctctgaggagcgtttgctctaggattacag 43679090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 41513525 - 41513452
Alignment:
Q  130 gttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggg 202  Q
    |||||||||| || ||||| ||||||||||||||||| ||||| || | ||||| |||||||||| ||| ||||    
T  41513525 gttagaaaccgtatggtttgggcagagagagaaatgtttcttctctaaggagctcttgctctgggattataggg 41513452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 44611805 - 44612086
Alignment:
Q  18 acacataggcccacttagagggagagttagttacatgagagagaga-----aggtag--agttggttatatataggaatgagaatagagagtgagggtta 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||     ||  ||  ||||||||||||| ||||||||||||||||||||||| |||    
T  44611805 acacataggcccacttagagggagagttagttacatgagagagagagagagagaaagtgagttggttatataaaggaatgagaatagagagtgaggatta 44611904  T
Q  111 tctttgatcattttgttcggttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggtttt-- 207  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||| | |||||||||  |||||||||||||||||      
T  44611905 tctttgatcattttgttcagttagaaaccttagggtttaggcagagagagaaatgtctcttctctgaggggcttttgctacggggttacaggggttttct 44612004  T
Q  208 -----------cttctagaatacatttatttttaattcaataatacagtttatttc--tgtgtgaaatcgggtctctatcag 276  Q
               |||||  ||||||| |||| | |||||||||||||||||||||||  ||||||||||||||||||||||||    
T  44612005 tctgtaatacacttctgtaatacatctattgtcaattcaataatacagtttatttctttgtgtgaaatcgggtctctatcag 44612086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 69 - 243
Target Start/End: Original strand, 21899448 - 21899619
Alignment:
Q  69 gagttggttatatataggaatgagaatagagagtgagggttatctttgatcattttgttcggttagaaacctta-ggtttaggcagagagagaaatgtct 167  Q
    |||||||||||||| ||||||||||||||||||||||| |||||  ||||||||||||||  | || ||||||| |||||||||||||||||||||||||    
T  21899448 gagttggttatataaaggaatgagaatagagagtgaggattatc--tgatcattttgttc-atcag-aaccttagggtttaggcagagagagaaatgtct 21899543  T
Q  168 cttcactgaagagcttttgctctggggttacaggggttttcttctagaatacatttatttttaattcaataataca 243  Q
    |||| |||| ||||||||||||| ||||||||| | || ||||||  |||||||  ||||| ||||||||| ||||    
T  21899544 cttctctgaggagcttttgctctagggttacagagattatcttctgtaatacatcaattttcaattcaatagtaca 21899619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 41642098 - 41642320
Alignment:
Q  24 aggcccacttagagggagagttagttacatgagagagagaaggtagagttggttatatataggaatgagaatagagagtgagggttatctttgatcattt 123  Q
    ||||||||||||||||||  |||||||||  ||| | |||| || |||  ||||||||| ||||||||||  | ||||| |||   ||||||||||||||    
T  41642098 aggcccacttagagggag--ttagttacaatagataaagaaagtggaga-ggttatataaaggaatgagaggatagagttaggc--atctttgatcattt 41642192  T
Q  124 tgttcggttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctagaatacatt 222  Q
    |||||  | || ||||||| ||||||||||||||||||||||||||||| |||| |||||| |||||| |||||||| ||  | ||||||  |||||||     
T  41642193 tgttc-atcag-aaccttagggtttaggcagagagagaaatgtctcttctctgaggagcttctgctctagggttaca-ggactatcttctgtaatacatc 41642289  T
Q  223 tatttttaattcaataatacagtttatttct 253  Q
    |||||| |||||||||||||| |||||||||    
T  41642290 tattttcaattcaataatacaatttatttct 41642320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 246
Target Start/End: Original strand, 14642621 - 14642724
Alignment:
Q  143 ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctagaatacatttatttttaattcaataatac 242  Q
    ||||||||| ||||||||||| | |||||  ||| |||||||||||||||||| ||| ||||| ||||||   |||||| |||||| |||||||||||||    
T  14642621 ggtttaggcggagagagaaatatttcttctttgaggagcttttgctctggggtaacaagggttatcttctgatatacatctattttcaattcaataatac 14642720  T
Q  243 agtt 246  Q
    ||||    
T  14642721 agtt 14642724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 21899374 - 21899419
Alignment:
Q  18 acacataggcccacttagagggagagttagttacatgagagagaga 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  21899374 acacataggcccacttagagggagagttagttacatgagagagaga 21899419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 44031612 - 44031561
Alignment:
Q  149 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 200  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  44031612 ggcagagagagaaatgtctcttctctgaggagcttttgctctgggattacag 44031561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 28876768 - 28876819
Alignment:
Q  149 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 200  Q
    |||||||||||| |||||||||| |||| |||||||||||||||| ||||||    
T  28876768 ggcagagagagagatgtctcttctctgaggagcttttgctctgggattacag 28876819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 37811038 - 37811089
Alignment:
Q  149 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 200  Q
    |||||||| |||||||||||||| |||| |||||||||||||||| ||||||    
T  37811038 ggcagagacagaaatgtctcttctctgaggagcttttgctctgggattacag 37811089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 19620410 - 19620367
Alignment:
Q  149 ggcagagagagaaatgtctcttcactgaagagcttttgctctgg 192  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||    
T  19620410 ggcagagagagaaatgtctcttctctgaggagctcttgctctgg 19620367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 44872997 - 44872937
Alignment:
Q  143 ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggtt 205  Q
    ||||| |||||||||| |||||||||||| | ||||  ||||||||||||| |||||||||||    
T  44872997 ggtttgggcagagagaaaaatgtctcttctcagaag--cttttgctctgggattacaggggtt 44872937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 192
Target Start/End: Original strand, 51837774 - 51837817
Alignment:
Q  149 ggcagagagagaaatgtctcttcactgaagagcttttgctctgg 192  Q
    |||||||||||| |||||||||| |||| |||||||||||||||    
T  51837774 ggcagagagagagatgtctcttctctgaggagcttttgctctgg 51837817  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 251
Target Start/End: Complemental strand, 36283692 - 36283601
Alignment:
Q  160 aaatgtctcttcactgaagagcttttgctctggggttaca-ggggttttcttctagaatacatttatttttaattcaataatacagtttattt 251  Q
    |||||||||||  |||| ||||||||||| ||||||||||  ||| || |||||  |||| || |||||| || |||||||||||||||||||    
T  36283692 aaatgtctcttttctgaggagcttttgctatggggttacattggggttccttctgtaatatatctattttcaa-tcaataatacagtttattt 36283601  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 51836598 - 51836646
Alignment:
Q  152 agagagagaaatgtctcttcactgaagagcttttgctctggggttacag 200  Q
    ||||||||  |||||||||| |||| |||||||||||||||| ||||||    
T  51836598 agagagagtgatgtctcttctctgaggagcttttgctctgggattacag 51836646  T

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Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 30955357 - 30955132
Alignment:
Q  18 acacataggcccacttagagggagagttagttacatgagagagaga--aggtagagttggttatatataggaatgagaatagagagtgagggttatcttt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | || |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  30955357 acacataggcccacttagagggagagttagttacatgagagagagagaaagt-gagttggttatataaaggaatgagaatagagagtgaggattatcttt 30955259  T
Q  116 gatcattttgttcggttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctag 214  Q
    |||||||||||||  | || ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||| | || ||||||      
T  30955258 gatcattttgttc-atcag-aaccttagggtttaggcagagagagaaatgtctcttctctgaggagcttttgctctagggttacagagattatcttctgt 30955161  T
Q  215 aatacatttatttttaattcaataataca 243  Q
    |||||||  ||||| ||||||||| ||||    
T  30955160 aatacatcaattttcaattcaatagtaca 30955132  T

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Target: chr8; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 30958010 - 30957785
Alignment:
Q  18 acacataggcccacttagagggagagttagttacatgagagagaga--aggtagagttggttatatataggaatgagaatagagagtgagggttatcttt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | || |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  30958010 acacataggcccacttagagggagagttagttacatgagagagagagaaagt-gagttggttatataaaggaatgagaatagagagtgaggattatcttt 30957912  T
Q  116 gatcattttgttcggttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctag 214  Q
    |||||||||||||  | || ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||| | || ||||||      
T  30957911 gatcattttgttc-atcag-aaccttagggtttaggcagagagagaaatgtctcttctctgaggagcttttgctctagggttacagagattatcttctgt 30957814  T
Q  215 aatacatttatttttaattcaataataca 243  Q
    |||||||  ||||| ||||||||| ||||    
T  30957813 aatacatcaattttcaattcaatagtaca 30957785  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 40984931 - 40984866
Alignment:
Q  178 gagcttttgctctggggttacaggggttttcttctagaatacatttatttttaattcaataataca 243  Q
    ||||||||||| |||||||||||||||| | ||||  ||||||| |||||| ||||||||||||||    
T  40984931 gagcttttgctatggggttacaggggttattttctgtaatacatctattttcaattcaataataca 40984866  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 190
Target Start/End: Original strand, 36824584 - 36824631
Alignment:
Q  143 ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctct 190  Q
    ||||||||||||||||||||||||||||| |||| |||||| ||||||    
T  36824584 ggtttaggcagagagagaaatgtctcttctctgaggagcttatgctct 36824631  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 40985227 - 40985187
Alignment:
Q  132 tagaaaccttagg-tttaggcagagagagaaatgtctcttc 171  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  40985227 tagaaaccttagggtttaggcagagagagaaatgtctcttc 40985187  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 31310235 - 31310193
Alignment:
Q  156 agagaaatgtctcttcactgaagagcttttgctctggggttac 198  Q
    ||||||||| |||||| || |||||||||||||||||||||||    
T  31310235 agagaaatgcctcttccctcaagagcttttgctctggggttac 31310193  T

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Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 143 - 246
Target Start/End: Complemental strand, 41574279 - 41574177
Alignment:
Q  143 ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctagaatacatttatttttaattcaataatac 242  Q
    ||||||||||||  ||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||  |||||||||||||| |||||||||||||    
T  41574279 ggtttaggcagat-gagaaatgtctcttctctgaggagcttttgctctggggttacaggggttatcttctgtaatacatttattttcaattcaataatac 41574181  T
Q  243 agtt 246  Q
    ||||    
T  41574180 agtt 41574177  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 110 - 251
Target Start/End: Complemental strand, 15480989 - 15480848
Alignment:
Q  110 atctttgatcattttgttcggttagaaaccttagg-tttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttc 208  Q
    ||||||||||||||||||| ||||||| ||||||| ||| ||| ||||||| |||||||||||  ||| ||| |||||||| ||||||||||||||| ||    
T  15480989 atctttgatcattttgttcagttagaa-ccttagggtttgggccgagagaggaatgtctcttctatgaggagtttttgctcaggggttacaggggttatc 15480891  T
Q  209 ttctagaatacatttatttttaattcaataatacagtttattt 251  Q
    ||||  ||||||| |||||| |||||||||||||| |||||||    
T  15480890 ttctgtaatacatctattttcaattcaataatacaatttattt 15480848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 130 - 253
Target Start/End: Complemental strand, 14248627 - 14248504
Alignment:
Q  130 gttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctagaatacatttatttt 228  Q
    ||||| ||||||| ||||||||||||||||||||  ||||||| |||| |||||| |||||| |||||||| || || ||||||  ||||||| ||||||    
T  14248627 gttaggaaccttatggtttaggcagagagagaaacatctcttctctgaggagcttctgctctagggttaca-ggattatcttctgtaatacatctatttt 14248529  T
Q  229 taattcaataatacagtttatttct 253  Q
     |||||||||||||| ||| |||||    
T  14248528 caattcaataatacaatttctttct 14248504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 27439123 - 27439060
Alignment:
Q  131 ttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggg 193  Q
    |||| ||||||| ||||||||||||||||||||| ||||||| |||| |||||| |||||||||    
T  27439123 ttaggaaccttatggtttaggcagagagagaaatatctcttctctgaggagcttatgctctggg 27439060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 41422468 - 41422512
Alignment:
Q  149 ggcagagagagaaatgtctcttcactgaagagcttttgctctggg 193  Q
    |||||||||||| |||||||||| |||| ||||||||||||||||    
T  41422468 ggcagagagagagatgtctcttctctgaggagcttttgctctggg 41422512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 14672527 - 14672575
Alignment:
Q  152 agagagagaaatgtctcttcactgaagagcttttgctctggggttacag 200  Q
    ||||||||| |||||||||| |||| ||||||||||| |||| ||||||    
T  14672527 agagagagagatgtctcttctctgaggagcttttgctttgggattacag 14672575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 42819454 - 42819513
Alignment:
Q  143 ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggg 202  Q
    ||||||||| ||||||||||||||||||| |||| ||||| |||||||||| ||| ||||    
T  42819454 ggtttaggctgagagagaaatgtctcttctctgaggagctcttgctctgggattataggg 42819513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 26855837 - 26855797
Alignment:
Q  215 aatacatttatttttaattcaataatacagtttatttctgt 255  Q
    ||||||| |||||| ||||||||||||||||||||||||||    
T  26855837 aatacatatattttcaattcaataatacagtttatttctgt 26855797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 30101580 - 30101624
Alignment:
Q  149 ggcagagagagaaatgtctcttcactgaagagcttttgctctggg 193  Q
    |||||||||||| |||||||||| |||| ||||||||||||||||    
T  30101580 ggcagagagagagatgtctcttctctgaggagcttttgctctggg 30101624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 56331997 - 56332045
Alignment:
Q  152 agagagagaaatgtctcttcactgaagagcttttgctctggggttacag 200  Q
    |||||||||||||||||||| |||| ||||||||||||| || ||||||    
T  56331997 agagagagaaatgtctcttctctgaggagcttttgctctaggattacag 56332045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 30100435 - 30100486
Alignment:
Q  149 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 200  Q
    |||||||||||| |||||||||| |||| ||||||||||| |||| ||||||    
T  30100435 ggcagagagagagatgtctcttctctgaggagcttttgctttgggattacag 30100486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 26855911 - 26855851
Alignment:
Q  130 gttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctc 189  Q
    ||||||||||||  ||||| |||||||| ||||| |||||||| |||| ||||||||||||    
T  26855911 gttagaaaccttctggtttgggcagagatagaaacgtctcttctctgaggagcttttgctc 26855851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 48367677 - 48367725
Alignment:
Q  152 agagagagaaatgtctcttcactgaagagcttttgctctggggttacag 200  Q
    ||||||||  |||||||||| |||| |||||||||||||||| ||||||    
T  48367677 agagagagtgatgtctcttctctgaggagcttttgctctgggattacag 48367725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 203
Target Start/End: Complemental strand, 24943 - 24871
Alignment:
Q  131 ttagaaaccttaggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacagggg 203  Q
    |||||||||||| | || ||||||||||||||| |||||||  ||| |||||| |||| |||| |||||||||    
T  24943 ttagaaaccttatggtttggcagagagagaaatatctcttctttgaggagcttctgctttgggcttacagggg 24871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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