View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19012_low_1 (Length: 593)

Name: NF19012_low_1
Description: NF19012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19012_low_1
NF19012_low_1
[»] chr8 (8 HSPs)
chr8 (19-588)||(41811598-41812167)
chr8 (243-490)||(41798426-41798673)
chr8 (243-424)||(41804885-41805066)
chr8 (19-166)||(41798804-41798951)
chr8 (77-169)||(41805194-41805285)
chr8 (168-241)||(41798708-41798781)
chr8 (494-567)||(41798328-41798401)
chr8 (525-588)||(41804700-41804763)


Alignment Details
Target: chr8 (Bit Score: 554; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 19 - 588
Target Start/End: Complemental strand, 41812167 - 41811598
Alignment:
Q  19 acctgaagctcgtatgagatgtttgagatgcggttctcataattattgcagtcatccgaaaatttagagcttatagtatctatcccagatatcatactgt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41812167 acctgaagctcgtatgagatgtttgagatgcggttctcataattattgcagtcatccgaaaatttagagcttatagtatctatcccagatatcatactgt 41812068  T
Q  119 tgacacactttttaatacttgtgatagtttcatgaaaagcttcattgtcagtagcaatcctgtcttcaagtgctctctgaacttgctgaaacttctcttc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41812067 tgacacactttttaatacttgtgatagtttcatgaaaagcttcattgtcagtagcaatcctgtcttcaagtgctctctgaacttgctgaaacttttcttc 41811968  T
Q  219 caactttctaaagctctcttcctcttggtttgacaggcaaagctttacctcaagattcatgacattttcaagcaaagagctgacctcatctcctttctct 318  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41811967 cacctttctaaagctctcttcctcttggtttgacaggcaaagctttacctcaagattcatgacattttcaagcaaagagctgacctcatctcctttctct 41811868  T
Q  319 tccaggtctcttttcagttcttcaacttggtgttccaaatcagctaccatctgatcttttgaatcaatgtcttcaagaaacatttctgccatttttctca 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41811867 tccaggtctcttttcagttcttcaacttggtgttccaaatcagctaccatctgatcttttgaatcaatgtcttcaagaaacatttctgccatttttctca 41811768  T
Q  419 tcttccactccgcacgtttaagtttgacctgacagtcattataccaactatcaacgtgtttatattcttcatcccgttcttccaatattctcaaaagatc 518  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41811767 tcttccactccgcacgtttaagtttgacctgacagtcactataccaactatcaacgtgtttatattcttcatcccgttcttccaatattctcaaaagatc 41811668  T
Q  519 taggtatttgttggctaattcattcttttcattgtcaacctttgtgagggcctgtgcatgttcttctctg 588  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41811667 taggtatttgttggctaattcattattttcattgtcaacctttgtgagggcctgtgcatgttcttctctg 41811598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 243 - 490
Target Start/End: Complemental strand, 41798673 - 41798426
Alignment:
Q  243 ttggtttgacaggcaaagctttacctcaagattcatgacattttcaagcaaagagctgacctcatctcctttctcttccaggtctcttttcagttcttca 342  Q
    |||||||||||||| ||||||||||||||||||| ||||||| |||| ||||| ||| ||||||||||||||||||||||||||||||||||| ||||||    
T  41798673 ttggtttgacaggcgaagctttacctcaagattcctgacattctcaaacaaagtgctaacctcatctcctttctcttccaggtctcttttcaggtcttca 41798574  T
Q  343 acttggtgttccaaatcagctaccatctgatcttttgaatcaatgtcttcaagaaacatttctgccatttttctcatcttccactccgcacgtttaagtt 442  Q
    ||||||| ||||||||||| ||||||||||||||||||  ||||| ||||| |||||  ||||||||||| |  ||| |||| ||| |||  || |||||    
T  41798573 acttggttttccaaatcagttaccatctgatcttttgacccaatgccttcacgaaactcttctgccatttcttccattttcctctctgcaacttcaagtt 41798474  T
Q  443 tgacctgacagtcattataccaactatcaacgtgtttatattcttcat 490  Q
    ||||||  || |||||| ||||||||||||  ||||||||||||||||    
T  41798473 tgaccttccattcattaaaccaactatcaatttgtttatattcttcat 41798426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 243 - 424
Target Start/End: Complemental strand, 41805066 - 41804885
Alignment:
Q  243 ttggtttgacaggcaaagctttacctcaagattcatgacattttcaagcaaagagctgacctcatctcctttctcttccaggtctcttttcagttcttca 342  Q
    ||||||||||| || ||||||| || ||||||||  |||||| ||||||||| || |||  | || ||||||||  ||||||||| ||||||| ||||||    
T  41805066 ttggtttgacaagcgaagcttttccccaagattctcgacattctcaagcaaaaaggtgatgttatttcctttcttgtccaggtcttttttcaggtcttca 41804967  T
Q  343 acttggtgttccaaatcagctaccatctgatcttttgaatcaatgtcttcaagaaacatttctgccatttttctcatcttcc 424  Q
    |||||||||||||||||||| |||||||||||||||||  ||||| ||| |||||||  ||| |||||| ||  ||||||||    
T  41804966 acttggtgttccaaatcagcaaccatctgatcttttgacccaatgccttgaagaaactcttccgccattatttccatcttcc 41804885  T

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Target: chr8; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 41798951 - 41798804
Alignment:
Q  19 acctgaagctcgtatgagatgtttgagatgcggttctcataattattgcagtcatccgaaaatttagagcttatagtatctatcccagatatcatactgt 118  Q
    ||||||||||| |  ||||||||||| |||  |||||||| ||| ||||  || || ||||||||   ||| | |||||||||||||||||||| |||||    
T  41798951 acctgaagctcatgggagatgtttgatatgtagttctcatgatttttgctttcgtcggaaaatttccggctcaaagtatctatcccagatatcacactgt 41798852  T
Q  119 tgacacactttttaatacttgtgatagtttcatgaaaagcttcattgt 166  Q
    ||||||||  ||||| ||||||||||||||||||||||||||||||||    
T  41798851 tgacacacactttaacacttgtgatagtttcatgaaaagcttcattgt 41798804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 77 - 169
Target Start/End: Complemental strand, 41805285 - 41805194
Alignment:
Q  77 aaaatttagagcttatagtatctatcccagatatcatactgttgacacactttttaatacttgtgatagtttcatgaaaagcttcattgtcag 169  Q
    |||||||| |||||| |||||| || |||||||||| ||||||||  |||| |||| ||||||||||||||||||||||||||||||||||||    
T  41805285 aaaattta-agcttacagtatcgattccagatatcacactgttgaaccactctttagtacttgtgatagtttcatgaaaagcttcattgtcag 41805194  T

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Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 41798781 - 41798708
Alignment:
Q  168 agtagcaatcctgtcttcaagtgctctctgaacttgctgaaacttctc-ttccaactttctaaagctctcttcct 241  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||| ||||  ||||||||||||||||||||    
T  41798781 agtagcaatcctgtcttcaagttctctctgaacttgctgaaac-tctcgttccgcctttctaaagctctcttcct 41798708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 494 - 567
Target Start/End: Complemental strand, 41798401 - 41798328
Alignment:
Q  494 gttcttccaatattctcaaaagatctaggtatttgttggctaattcattcttttcattgtcaacctttgtgagg 567  Q
    ||||||||||| |||||  |||||| | || ||||| |||||||||||||||||||||||||||| || |||||    
T  41798401 gttcttccaatgttctctgaagatccatgtttttgtaggctaattcattcttttcattgtcaaccattctgagg 41798328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 525 - 588
Target Start/End: Complemental strand, 41804763 - 41804700
Alignment:
Q  525 tttgttggctaattcattcttttcattgtcaacctttgtgagggcctgtgcatgttcttctctg 588  Q
    ||||||||||||||||||||||||||||||||||  || |||||  | ||||||||||| ||||    
T  41804763 tttgttggctaattcattcttttcattgtcaaccactgcgagggtttttgcatgttcttttctg 41804700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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