View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19012_low_12 (Length: 380)
Name: NF19012_low_12
Description: NF19012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19012_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 370
Target Start/End: Original strand, 55103434 - 55103785
Alignment:
| Q |
19 |
ttgggatccaaggtaatttcttacattccattcaatgatatttttgatgtatgtagtctgtttaaactattgaataaattaattgatcaaatagtactgg |
118 |
Q |
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| T |
55103434 |
ttgggatccaaggtaatttcttacattccattcaatgatatttttgatgtatgtagtctgtttaaaatattgaataaattgattgataaaatagtactgg |
55103533 |
T |
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| Q |
119 |
tagtattttatatatagtgattaagagaatatttaatttgaggcagatggagtagctcttttctgggggatagattactacaacaatgaattattgcatt |
218 |
Q |
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| T |
55103534 |
tagtattttatatatagtgattaagagattatttaatttgaggcagatggagtagctcttttctgggggatagattactacaacaatgaattattgcatt |
55103633 |
T |
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| Q |
219 |
ctgataaggaacgagttggttctgtgacaacagagatactattggaaaaagatgagaattccttcacattgcaaaacggatggacatttccaagaagaat |
318 |
Q |
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| T |
55103634 |
ctgataaggaccgagttggttctgtgacaacagagatactattggaaaaagatgagaattccttcacattgcaaaacggatggacatttccaagaagaat |
55103733 |
T |
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| Q |
319 |
atatttcaacggtgaaaactgtgacatgcctttacctgacacattccctatg |
370 |
Q |
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| T |
55103734 |
atatttcaacggtgaaaactgtgacatgcctttacctgacacattccctatg |
55103785 |
T |
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