View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19012_low_13 (Length: 367)
Name: NF19012_low_13
Description: NF19012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19012_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 362
Target Start/End: Complemental strand, 39278882 - 39278537
Alignment:
| Q |
17 |
aaggggtgggtgagagagtgaatgaaaatgcaagaaagataaattagttaggtacatgcagacagaggaataacacatgggcatggaagctagctatctg |
116 |
Q |
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| T |
39278882 |
aaggggtgggtgagagagtgaatgaaaatgcaagaaagataaattagttaggtacatgcagacagaggaataacacatgggcatggaagctagctatctg |
39278783 |
T |
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| Q |
117 |
ctcttgctcataatatatggttatttgattaatttaatattgttagatgtattaattaattaatgttgacataaagaaaatagtttgggtagcaccgaag |
216 |
Q |
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| T |
39278782 |
ctcttgctcataatatatggttatttgattaatttaatattgttagatgtattaattaattaatgttgacataaagaaaatagtttgggtagcaccgaag |
39278683 |
T |
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| Q |
217 |
gtgtgaggtgggggtggtacaataaatgcgacaagtacgtaggttgatgcatttaataacaacggatgtcattttccttcttgcaattgatataatatta |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39278682 |
gtgtgaggtgggggtggtacaataaatgcgacaagtacgtaggttgatgcatttaataacaacgggtgtcattttccttcttgcaattgatataatatta |
39278583 |
T |
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| Q |
317 |
gatcagttcagataaaggtcgcatgaaccatggttattcatatcac |
362 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
39278582 |
gatcagatcagataaaggtcgcatgaaccatggttattcacatcac |
39278537 |
T |
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