View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19012_low_16 (Length: 323)
Name: NF19012_low_16
Description: NF19012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19012_low_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 23 - 308
Target Start/End: Original strand, 41504473 - 41504757
Alignment:
| Q |
23 |
atgagtactagtatttgtggtaggggctggtagcatatttaatcatctaacctacaccagcatatctgtgctcctgtcttcatgttgagctcacataata |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41504473 |
atgagtactagtatttgtggtaggggctggtagcatatttaatcatctaacctacaccagcatatctgtgctcctgtcttcatgttgagctcacataata |
41504572 |
T |
|
| Q |
123 |
attatttcatgtatatagtgttcacacaatcacatttttgtcaacnnnnnnnnntgtgttcgcacaatcacatgcataattcattaattaaaaacataaa |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| | ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41504573 |
attatttcatgtatatagtgttcacacaatcaca-ttttgtccaaaaaaaaaaatgtgttcacacaatcacatgcataattcattaattaaaaacataaa |
41504671 |
T |
|
| Q |
223 |
attcaataaaatccatgttaaagttattttagggcccagttggtaggggnnnnnnngataacagttgatataataagagaatattg |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41504672 |
attcaataaaatccatgttaaagttattttagggcccagttggtaggggaaaaaaagataacagttgatataataagagaatattg |
41504757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University