View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19012_low_18 (Length: 304)
Name: NF19012_low_18
Description: NF19012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19012_low_18 |
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| [»] scaffold0130 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 22 - 288
Target Start/End: Original strand, 17595001 - 17595268
Alignment:
| Q |
22 |
ataaatgctcaaagcagcaaggactgaagcggcatcattcaaaagaaaattaacgacaaggttctatattcttgatcttttatgtatagggctgatatat |
121 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17595001 |
ataaatgctcaaagcagcaaggaccgaagcggcatcattcaaaagaaaattaacgacaaggttctatattcttgatcttttatgtatagggctgatatat |
17595100 |
T |
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| Q |
122 |
gtcttcaaatacttcaaaagtaattaatgacaactcaggacttcataatttgtctttaatcaatat--tatatatcttccaactatttttctggcgcata |
219 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
17595101 |
gt-ttcaaatacttcaaaagtaattaatgacaactcaggacttcataatttgtctttaatcaatattatatatatcttccaactatttttgtggcgcata |
17595199 |
T |
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| Q |
220 |
ggtgcatattaaagaaaaccatccaggttctatatttcttcaattaattcatagcacttgcttggtttg |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17595200 |
ggtgcatattaaagaaaaccatccaggttctatatttcttcaattaattcatagcacttgcttggtttg |
17595268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 26903025 - 26902954
Alignment:
| Q |
12 |
atgaacccggataaatgctcaaagcagcaaggactgaagcggcatcattcaaaagaaaattaacgacaaggt |
83 |
Q |
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| T |
26903025 |
atgaacccggataaatgctcaaagcagcgaggaccgaagcggcaccattcaaaagaaaattaatgacaaggt |
26902954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 26902946 - 26902886
Alignment:
| Q |
222 |
tgcatattaaagaaaaccatccaggttctatatttcttcaattaattcatagcacttgctt |
282 |
Q |
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| T |
26902946 |
tgcatattaaagaaaaccatccagattctatatttcctcaattaatacatagaactcgctt |
26902886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0130 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 288
Target Start/End: Complemental strand, 17264 - 16992
Alignment:
| Q |
14 |
gaacccggataaatgctcaaagcagcaaggactgaagcggcatcattcaaaagaaaattaacgacaaggttctatattcttgatcttttatgtatagggc |
113 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17264 |
gaacccggataaatgctcaaagcagcaaggaccgaagcggcgtcattcaaaagaaaattaacgacaaggttctatattcttgatcttttatgta--gggc |
17167 |
T |
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| Q |
114 |
tgatatatgtcttcaaatacttcaaaagtaattaatgacaactcaggacttcataatttgtctttaatcaatattatatatcttccaactatttttctgg |
213 |
Q |
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| T |
17166 |
tgatatatgtcttcaaatacttcaaaagtaattagtgacaactcaggacttcataatttgtctttaatcgatattatatatcttccaattatttttctga |
17067 |
T |
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| Q |
214 |
cgcataggtgcatattaaagaaaaccatccaggttctatatttcttcaattaattcatagcacttgcttggtttg |
288 |
Q |
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| T |
17066 |
cgcatatgtgcatattaaagaaaaccatccaggttctatatttcctcaattaattcatagcacttgctgggtttg |
16992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 4281393 - 4281134
Alignment:
| Q |
19 |
cggataaatgctcaaagcagcaaggactgaagcggcatcattcaaaagaaaattaacgacaaggttctatattcttgatcttttatgtatagggctgata |
118 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4281393 |
cggataaatgctcaaagcagcaaggaccgaggcggcatcattcaaaagaaaattaacgacaaggttctatattcttgatcttttatgtatagggctgata |
4281294 |
T |
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| Q |
119 |
tatgtcttcaaatacttcaaaagtaattaatgacaactcaggacttcataatttgtctttaatcaatattatatatcttccaactatttttctggcgcat |
218 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4281293 |
tatgtcttcaaatacttcaaaagtaattagtaacaactcaggacttcataatttgtctttaa----------atatcttccaactatttttctggcgcat |
4281204 |
T |
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| Q |
219 |
aggtgcatattaaagaaaaccatccaggttctatatttcttcaattaattcatagcacttgcttggtttg |
288 |
Q |
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| T |
4281203 |
atgtgcatattaaagaaaaccatccaggttctatatttcctcaattaattcatagcacttgcttggtttg |
4281134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 12 - 288
Target Start/End: Original strand, 12325960 - 12326236
Alignment:
| Q |
12 |
atgaacccggataaatgctcaaagcagcaaggactgaagcggcatcattcaaaagaaaattaacgacaaggttctatattcttgatcttttatgtatagg |
111 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
12325960 |
atgaacccggataaatgctcaaagcagcgaggaccgaagcggcaccattcaaaagaaaattaatgacaaggttctatattcctgatcttttatgtatagg |
12326059 |
T |
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| Q |
112 |
gctgatatatgtcttcaaatacttcaaaagtaattaatgacaactcaggacttcataatttgtctttaatcaatattatatatcttccaactatttttct |
211 |
Q |
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||||||||||||||||||| | |||||||||||||| | |||||||||||||||||| ||| ||||||||| |||| ||||||||||||||||||||||| |
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| T |
12326060 |
gctgatatatgtcttcaaacatttcaaaagtaattagtaacaactcaggacttcatattttatctttaatcgatatcatatatcttccaactatttttct |
12326159 |
T |
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| Q |
212 |
ggcgcataggtgcatattaaagaaaaccatccaggttctatatttcttcaattaattcatagcacttgcttggtttg |
288 |
Q |
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|| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
12326160 |
ggtacatatatgcatattaaagaaaaccatccaggttctatatttcctcaattaattcatagcactcgcttggtttg |
12326236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 20196579 - 20196726
Alignment:
| Q |
12 |
atgaacccggataaatgctcaaagcagcaaggactgaagcggcatcattcaaaagaaaattaacgacaaggttctatattcttgatcttttatgtatagg |
111 |
Q |
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|||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||| |
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| T |
20196579 |
atgaacacggataaatgctcaaagcagcgaggaccgaagcggcatcattcaaaagaaaattaatgacaaggttctatattcttgatctttaacgtatagg |
20196678 |
T |
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| Q |
112 |
gctgatatatgtcttcaaatacttcaaaagtaattaatgacaactcag |
159 |
Q |
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||| | ||||||||||||| | |||||| ||||||| ||||||||||| |
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| T |
20196679 |
gcttaaatatgtcttcaaacatttcaaatgtaattagtgacaactcag |
20196726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 31710490 - 31710557
Alignment:
| Q |
14 |
gaacccggataaatgctcaaagcagcaaggactgaagcggcatcattcaaaagaaaattaacgacaag |
81 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31710490 |
gaacccggataaatgctcaaagcagcaaggatcgaagcggcatcattcaaaagaaaattaacgacaag |
31710557 |
T |
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