View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19012_low_19 (Length: 271)
Name: NF19012_low_19
Description: NF19012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19012_low_19 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 71 - 271
Target Start/End: Complemental strand, 12992767 - 12992567
Alignment:
| Q |
71 |
tggtgaatcgcgcgattaggaacagggatgttgtgatcgtgaaattggagcagaaactatgttcaaacaaaccaaactggagaggaactcataaaacatt |
170 |
Q |
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| T |
12992767 |
tggtgaatcgcacgattaggaacaaggatgttgtgatcgtgaaattggagcagaaactatgttcaaacaaaccaaactggagaggaactcataaaacatt |
12992668 |
T |
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| Q |
171 |
acaaacaatcatatagtaaaaatccaaaggttgatcatgatgttgcttagattcaaatgaaacatagaagtttacaagaacaaaatacaaagcttaaaat |
270 |
Q |
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| T |
12992667 |
acaaacaatcatatagtaaaaatccaaaggttgatcatgatgttgcttagattcaaatgaaacatagaagtttacaagaacaaaatacaaagcttaaaat |
12992568 |
T |
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| Q |
271 |
c |
271 |
Q |
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| T |
12992567 |
c |
12992567 |
T |
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Back To:
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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 270
Target Start/End: Original strand, 12885158 - 12885256
Alignment:
| Q |
171 |
acaaacaatcatatagtaaaaatccaaaggttgatcatgatgttgcttagattcaaatgaaacatagaagtttacaagaacaaaatacaaagcttaaaat |
270 |
Q |
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||||||||||||| || ||||||||||||| ||| |||||| | ||||||||||||| ||||| ||| ||||| | | |||||||||| ||||||||| |
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| T |
12885158 |
acaaacaatcatagagaaaaaatccaaaggctga-catgattctccttagattcaaatcaaacacagatgtttatagtaccaaaatacaatgcttaaaat |
12885256 |
T |
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