View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19012_low_2 (Length: 530)

Name: NF19012_low_2
Description: NF19012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19012_low_2
NF19012_low_2
[»] chr5 (5 HSPs)
chr5 (113-512)||(4175836-4176238)
chr5 (258-511)||(4171822-4172089)
chr5 (28-116)||(14591840-14591928)
chr5 (23-116)||(30917461-30917554)
chr5 (28-116)||(19828629-19828717)
[»] chr3 (2 HSPs)
chr3 (28-116)||(40396829-40396917)
chr3 (41-100)||(50232689-50232747)
[»] chr4 (3 HSPs)
chr4 (12-101)||(25871128-25871217)
chr4 (12-116)||(25506234-25506338)
chr4 (12-101)||(16748843-16748932)
[»] chr6 (1 HSPs)
chr6 (12-116)||(31121161-31121265)
[»] chr1 (1 HSPs)
chr1 (28-101)||(50052797-50052870)
[»] chr2 (1 HSPs)
chr2 (11-100)||(13007955-13008044)


Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 113 - 512
Target Start/End: Original strand, 4175836 - 4176238
Alignment:
Q  113 aattcctaagcaatgtagtgttttttggtgtaccggagcaaaaaccaataatgataaatgataaatatctaagataagagaccatcctatgcaatgcaca 212  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4175836 aattcctaagcaatgtagagttttttggtgtaccgtagcaaaaaccaataatgataaatgataaatatctaagataagagaccatcctatgcaatgcaca 4175935  T
Q  213 ccacatatattattgaccatatataattatatacctttcgtcctttt---tgaaatttaaagcacgtagttcttttccatcctcagatttcagcactatc 309  Q
    | ||||||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4175936 caacatatattattgaccatatataattatataccttccgtccttttctttgaaatttaaagcacgtagttcttttccatcctcagatttcagcactatc 4176035  T
Q  310 ctgtacagccgaatttatgaactgatataagaattgtgcaacaaggcaagggataaaaataaaaaggtaacgaattaaattacccttgaatttctaaata 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4176036 ctgtacagccgaatttatgaactgatataagaattgtgcaacaaggcaagggataaaaataaaaaggtaacgaattaaattacccttgaatttctaaata 4176135  T
Q  410 ttgagttctgagataatttgctactccaattgaatcaagagcactccacccatttttggaaagggtgagtgaagttccaccagctctaagtgactccgac 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4176136 ttgagttctgagataatttgctactccaattgaatcaagagcactccacccatttttggaaagggtgagtgaagttccaccagttctaagtgactccgac 4176235  T
Q  510 tgt 512  Q
    |||    
T  4176236 tgt 4176238  T

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Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 258 - 511
Target Start/End: Original strand, 4171822 - 4172089
Alignment:
Q  258 tttgaaatttaaagcacgtagttcttttccatcctcagatttcagcactatcctgtacagccgaatttatgaac---------------tgatataagaa 342  Q
    ||||||||| || |||||||||||| ||||||||||||| |||| ||| |||||||||||| ||  ||||||||               | ||||| | |    
T  4171822 tttgaaattgaaggcacgtagttctcttccatcctcagacttcaccaccatcctgtacagctgatattatgaaccagctcaagctcagctaatatatgca 4171921  T
Q  343 ttgtgcaacaaggcaagggataaaaataaaaaggtaacgaattaaattacccttgaatttctaaatattgagttctgagataatttgctactccaattga 442  Q
    ||||||||| ||||||| ||||||||| ||||  |||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  4171922 ttgtgcaaccaggcaagtgataaaaattaaaac-taacaaattaagttacccttgaatttctaaatattgagttctgaggtaatttgctactccaatgga 4172020  T
Q  443 atcaagagcactccacccatttttggaaagggtgagtgaagttccaccagctctaagtgactccgactg 511  Q
    ||||||  ||||||||||||| ||| |||||||||||||||||||||| | || ||||||||| |||||    
T  4172021 atcaagtacactccacccattcttgaaaagggtgagtgaagttccaccggttcgaagtgactctgactg 4172089  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 14591928 - 14591840
Alignment:
Q  28 aaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggaggaaatt 116  Q
    |||||||||||| |||||||||| ||| || ||| ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||    
T  14591928 aaaatgaatgaagggctaagatttattcagatgtcattaaaaggaatggatggctaagattatttcacaggagaaaacaggaggaaatt 14591840  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 30917461 - 30917554
Alignment:
Q  23 acattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggaggaaatt 116  Q
    ||||||||||||||||| || |||||||||||||| ||| |||||||| |||||| ||||| |||||||||||| |||| || ||||| |||||    
T  30917461 acattaaaatgaatgaagggttaagattaattaagatgtcattaaaagaaatggacggctaagattatttcactcgagaaaataggagaaaatt 30917554  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 19828717 - 19828629
Alignment:
Q  28 aaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggaggaaatt 116  Q
    |||||||||||| |||||| |||| ||||| ||||||||||| | ||||| ||||| ||||||||||| ||||| |||| |||||||||    
T  19828717 aaaatgaatgaagggctaaaattagttaagatgttattaaaatggatggacggctaagattatttcacaggagaaaacatgaggaaatt 19828629  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 40396829 - 40396917
Alignment:
Q  28 aaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggaggaaatt 116  Q
    |||||||||||| | ||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||    
T  40396829 aaaatgaatgaaggactaagattaattaagatgtcattaaaaggaatggatggctaagattatttcacaggagaaaacaggagaaaatt 40396917  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 50232689 - 50232747
Alignment:
Q  41 ggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggag 100  Q
    ||||||||||||||||| ||| ||||||| |||||||||| || ||||||||||| ||||    
T  50232689 ggctaagattaattaagatgtcattaaaa-gaatggatggttaagattatttcacaggag 50232747  T

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Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 25871217 - 25871128
Alignment:
Q  12 atgaaaacgacacattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggaga 101  Q
    ||||||| |||||||| |||||||||||||||| |||||| ||||||||| ||||||||||||||| || || ||||||||||| |||||    
T  25871217 atgaaaatgacacattgaaatgaatgaaaggctgagattagttaaggtgtcattaaaaggaatggacggttaagattatttcacaggaga 25871128  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 25506338 - 25506234
Alignment:
Q  12 atgaaaacgacacattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggagg 111  Q
    ||||||| |||||||||||||||||||| |||| |||||||||||||| | |||||||| |||||| ||||| ||||  ||||| ||||| ||| |||||    
T  25506338 atgaaaatgacacattaaaatgaatgaagggctgagattaattaaggtttcattaaaagaaatggacggctaagattgattcacaggagaaaactggagg 25506239  T
Q  112 aaatt 116  Q
    |||||    
T  25506238 aaatt 25506234  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 16748932 - 16748843
Alignment:
Q  12 atgaaaacgacacattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggaga 101  Q
    ||||||| |||||||| ||||||||||||| || |||||| ||||||||| ||||||| ||||||| | ||| ||||||||||| |||||    
T  16748932 atgaaaatgacacattgaaatgaatgaaagactgagattagttaaggtgtcattaaaaagaatggacgactaagattatttcacaggaga 16748843  T

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Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 31121161 - 31121265
Alignment:
Q  12 atgaaaacgacacattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggagg 111  Q
    ||||||| |||||||||||||||||||| |||| |||||||||||||| | |||||||| |||||| ||||| ||||  ||||| ||||| ||| |||||    
T  31121161 atgaaaatgacacattaaaatgaatgaagggctgagattaattaaggtttcattaaaagaaatggacggctaagattgattcacaggagaaaactggagg 31121260  T
Q  112 aaatt 116  Q
    |||||    
T  31121261 aaatt 31121265  T

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Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 50052870 - 50052797
Alignment:
Q  28 aaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggaga 101  Q
    |||||||||||| | ||||||||||||||| ||| ||||||||||||||||||||  ||||||||||| |||||    
T  50052870 aaaatgaatgaaggactaagattaattaagatgtcattaaaaggaatggatggctgagattatttcacaggaga 50052797  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 13007955 - 13008044
Alignment:
Q  11 gatgaaaacgacacattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggag 100  Q
    ||||| || ||||| |||||||||||||| ||||||||| | ||||||||| |||||||||||||||  || |  |||||||||||||||    
T  13007955 gatgacaatgacacgttaaaatgaatgaagggctaagatcagttaaggtgtcattaaaaggaatggacagccaaaattatttcactggag 13008044  T

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