View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19012_low_21 (Length: 263)
Name: NF19012_low_21
Description: NF19012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19012_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 42144219 - 42144021
Alignment:
| Q |
18 |
cttcctgtgttccacaaacagagggatttcttgttttaccctgcatgggcatttggattacctatatggattcttaggatcccgatctcctttttggaat |
117 |
Q |
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| T |
42144219 |
cttcctgtgttccacaaacagagggatttcttgttttaccctgcatgggcatttggattacctatatggattcttagggtcccgatctcctttttggaat |
42144120 |
T |
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| Q |
118 |
ctttgatatggattgtacttacatattttacagttgggtttgctccttctgctagcaggtaatatgagtttacttttatcaactatatacattcaaccc |
216 |
Q |
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| T |
42144119 |
ctttgatatggattgtacttacatattttacagttgggtttgctccttctgctagcaggtaatatgagtttacttttatcaactatatacattcaaccc |
42144021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 42156166 - 42155977
Alignment:
| Q |
18 |
cttcctgtgttccacaaacagagggatttcttgttttaccctgcatgggcatttggattacctatatggattcttaggatcccgatctcctttttggaat |
117 |
Q |
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| T |
42156166 |
cttcctgtgttctataaacaaagggatttcatgttttatcctgcatgggcatttggattacccatatggattcttaggattcctctttcctttttggaat |
42156067 |
T |
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| Q |
118 |
ctttgatatggattgtacttacatattttacagttgggtttgctccttctgctagcaggtaatatgagtttacttttatc-aactatata |
206 |
Q |
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| T |
42156066 |
cagcgatatggattgttcttacatattttacaattgggttcgctccttctgctagcaggtaatatgagtgtacttttttcgaactatata |
42155977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 42175335 - 42175149
Alignment:
| Q |
21 |
cctgtgttccacaaacagagggatttcttgttttaccctgcatgggcatttggattacctatatggattcttaggatcccgatctcctttttggaatctt |
120 |
Q |
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| T |
42175335 |
cctgtgttctacaaacaaagggatatcatgttttaccctgcatgggcatttgcattacccatatggattcttaggatccctctttcctttatggaatcag |
42175236 |
T |
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| Q |
121 |
tgatatggattgtacttacatattttacagttgggtttgctccttctgctagcaggtaatatgagtttacttttatc-aactatata |
206 |
Q |
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| T |
42175235 |
cgatatggattgttcttacatattttacaattgggttcgctccttctgctagcaggtaatatgagtgtacttttttcgaactatata |
42175149 |
T |
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