View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19012_low_24 (Length: 257)
Name: NF19012_low_24
Description: NF19012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19012_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 8e-70; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 82 - 251
Target Start/End: Complemental strand, 45162737 - 45162568
Alignment:
| Q |
82 |
ctggtgacggatcgccggacaacaaccacccaacacaccaaaccccaaaagcgttgagattgccaattgcgtcggattcgctcgaaaacctgctgatcaa |
181 |
Q |
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| T |
45162737 |
ctggtgacagatcaccgaacaacaaccacccaacacaccaaaccccaaaagcgttgagattgccacttgcgtcggattcgctcaaaaacctgttgatcaa |
45162638 |
T |
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| Q |
182 |
aaccgaatctgaatcaaacaacctagaacgacccaacatgtcccttgcaaagacggtgactcaaagaaac |
251 |
Q |
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| T |
45162637 |
aactgaatctgaatcaaacaacctagaacgacccaccatgtcccttgcaaagacggcgactcaaagaaac |
45162568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 140 - 251
Target Start/End: Original strand, 2395463 - 2395574
Alignment:
| Q |
140 |
attgccaattgcgtcggattcgctcgaaaacctgctgatcaaaaccgaatctgaatcaaacaacctagaacgacccaacatgtcccttgcaaagacggtg |
239 |
Q |
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| T |
2395463 |
attgccacttgcgtcggattcgctcgaaatcttgctgatcaaaaccggatctgaatcaaacaacctagaacgacccaccatgtctcttgcaaagtcggcg |
2395562 |
T |
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| Q |
240 |
actcaaagaaac |
251 |
Q |
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| T |
2395563 |
actcaaagaaac |
2395574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 84 - 139
Target Start/End: Original strand, 2395311 - 2395366
Alignment:
| Q |
84 |
ggtgacggatcgccggacaacaaccacccaacacaccaaaccccaaaagcgttgag |
139 |
Q |
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| T |
2395311 |
ggtgacagatctccggacaacaaccacctaacacaccaaaccccaaaagcgttgag |
2395366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 91 - 251
Target Start/End: Original strand, 24451127 - 24451287
Alignment:
| Q |
91 |
gatcgccggacaacaaccacccaacacaccaaaccccaaaagcgttgagattgccaattgcgtcggattcgctcgaaaacctgctgatcaaaaccgaatc |
190 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24451127 |
gatctccggacaacaaccacccaacgcaccaaaccccaaaagcgttgagattgccacttgcgtcggattcgctcgaaaacctgctgatcaaaaccggatc |
24451226 |
T |
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| Q |
191 |
tgaatcaaacaacctagaacgacccaacatgtcccttgcaaagacggtgactcaaagaaac |
251 |
Q |
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|||||||| ||||||||||||||||| || || |||||||||| ||| ||||||||||||| |
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| T |
24451227 |
tgaatcaaccaacctagaacgacccaccacgtaccttgcaaagtcggcgactcaaagaaac |
24451287 |
T |
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