View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19012_low_27 (Length: 236)
Name: NF19012_low_27
Description: NF19012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19012_low_27 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 48106525 - 48106306
Alignment:
| Q |
17 |
ggatgaaccatcatatactcacaaacattgactaccaggaatggtttgtgtcaagattcaaatacacaactttcaccaatgaaatgaaatggtatagtac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48106525 |
ggatgaaccatcatatactcacaaacattgactaccaggaatggtttgtgtcaagattcaaatacacaactttcaccaatgaaatgaaatggtatagtac |
48106426 |
T |
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| Q |
117 |
agaaataattccaggccaagaaaactacactatctcagatacaatgttagaatttgctaaagataatggaatttctgtcagaggtcataacattttctgg |
216 |
Q |
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| T |
48106425 |
agaaataattccaggccaagaaaactacactatctcagatgcaatgttagaatttgctaaagataatggaatttctgtcagaggtcataacattttctgg |
48106326 |
T |
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| Q |
217 |
gacgatgaaaaatatcaacc |
236 |
Q |
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|||||||||||||||||||| |
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| T |
48106325 |
gacgatgaaaaatatcaacc |
48106306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 48062889 - 48062688
Alignment:
| Q |
18 |
gatgaaccatcatatactcacaaacattgactaccaggaatggtttgtgtcaagattcaaatacacaactttcaccaatgaaatgaaatggtatagtaca |
117 |
Q |
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|||||||| |||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| || || ||||| |||||||||||| |
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| T |
48062889 |
gatgaaccgtcatatcctcacaaacagtgactaccagaaatggtttgtgtcaagattcaaatacacaactttcactaacgagatgaagtggtatagtaca |
48062790 |
T |
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| Q |
118 |
gaaataattccaggccaagaaaactacactatctcagatacaatgttagaatttgctaaagataatggaatttctgtcagaggtcataacattttctggg |
217 |
Q |
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| T |
48062789 |
gagaaaatccaaggccatgaaaactatactatcccagatgccatgctgaaatttgctaaggaaaatggcatatctgtcagaggtcataacattttgtggg |
48062690 |
T |
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| Q |
218 |
ac |
219 |
Q |
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|| |
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| T |
48062689 |
ac |
48062688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 48066979 - 48066770
Alignment:
| Q |
17 |
ggatgaaccatcatatactcacaaacattgactaccaggaatggtttgtgtcaagattcaaatacacaactttcaccaatgaaatgaaatggtatagtac |
116 |
Q |
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|||||||| |||| || |||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| |
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| T |
48066979 |
ggatgaactatcacatcctcacaaacattgagtaccagaaatggtttgtgtcaagattcaagtacacaactttcactaatgagatgaagtggtatagtac |
48066880 |
T |
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| Q |
117 |
agaaataattccaggccaagaaaactacactatctcagatacaatgttagaatttgctaaagataatggaatttctgtcagaggtcataacattttctgg |
216 |
Q |
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||| | ||||| |||||| |||||||| ||||| | ||| | ||| | ||||||| ||||| ||||| |||||||||||||||||| |||||| ||| |
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| T |
48066879 |
agagaaaattcaaggccaggaaaactatactattcctgatgccatgctgaaatttgccaaagaaaatggcatttctgtcagaggtcatgccattttgtgg |
48066780 |
T |
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| Q |
217 |
gacgatgaaa |
226 |
Q |
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| T |
48066779 |
gacgatgaaa |
48066770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 48099924 - 48099715
Alignment:
| Q |
17 |
ggatgaaccatcatatactcacaaacattgactaccaggaatggtttgtgtcaagattcaaatacacaactttcaccaatgaaatgaaatggtatagtac |
116 |
Q |
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||||||||||| | || || |||||| |||| |||||| ||||||||||||||||||||| |||||| |||| || ||||| ||||| ||||||||||| |
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| T |
48099924 |
ggatgaaccattacatccttacaaactttgagtaccagagatggtttgtgtcaagattcaagtacacagcttttactaatgagatgaagtggtatagtac |
48099825 |
T |
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| Q |
117 |
agaaataattccaggccaagaaaactacactatctcagatacaatgttagaatttgctaaagataatggaatttctgtcagaggtcataacattttctgg |
216 |
Q |
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||| | | ||| |||||| |||||||| |||||| ||||| | ||| | |||| || ||||| ||||| ||||||||||||||||||| | |||||||| |
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| T |
48099824 |
agagagatttcaaggccaggaaaactatactatcccagatgccatgatgaaattcgccaaagaaaatggcatttctgtcagaggtcataccgttttctgg |
48099725 |
T |
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| Q |
217 |
gacgatgaaa |
226 |
Q |
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|||||||||| |
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| T |
48099724 |
gacgatgaaa |
48099715 |
T |
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