View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19012_low_3 (Length: 528)
Name: NF19012_low_3
Description: NF19012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19012_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 101 - 512
Target Start/End: Complemental strand, 36149483 - 36149077
Alignment:
| Q |
101 |
ttaaagtcatgacactaagaccacgtgtgtgctatgtagagtacaatgcaagaggttaaaagtgtaagtaaatcttattttatctaatctaacaaaaatt |
200 |
Q |
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| T |
36149483 |
ttaaagtcatgacactaagaccacgtgtg--ctatgtagagtacaatgcaagaggttaaaagtgtaagtaagtcttattt-atctaatctaacaaaaatt |
36149387 |
T |
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| Q |
201 |
tagagtaaataaatataataatttgattggggggtgaggctaaggtgtgtccttttttgcgtgaaatcaacacgtatgcaaatgaccttaccaacaccgg |
300 |
Q |
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| T |
36149386 |
tagagtaaataaatataataatttaattggg---tgaggctaaggtgtgtccttttttgcgtgaaaccaacacgtatgcaaatgaacttaccaacaccgg |
36149290 |
T |
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| Q |
301 |
cttgcaacttgcaatgttactggtagtgctaactttgtttacatatattttgtaaagagggtacnnnnnnnagttatttgattg-ttaactatagcagac |
399 |
Q |
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| T |
36149289 |
cttgcaacttgcaatggtactggtagtgctaactttgtttacatatattttgtaaagagggtacttttttgagttatttgattgtttaactatagcagac |
36149190 |
T |
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| Q |
400 |
taagattctgaacattgcagataattaaatgcatagagtttagctcaggaattaaatattctttgttatcttagacaataaaacaattgtataagcattt |
499 |
Q |
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| T |
36149189 |
taagattctgaacattgcagataattaaatgcatagagtttagctcaggaattaaatattctttgttatcttggacaataaaacaattgtataagcattt |
36149090 |
T |
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| Q |
500 |
tcatagacaaaac |
512 |
Q |
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| T |
36149089 |
tcaatgacaaaac |
36149077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 36149545 - 36149482
Alignment:
| Q |
6 |
agcagcacagacggacggatcaatagaagcacacatgcacgtacgtgaagaatcatctcttgtt |
69 |
Q |
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| T |
36149545 |
agcaacacacacggacggatcaatagaagcacacatgcacgtacgtgaagactcatctcttgtt |
36149482 |
T |
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