View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19012_low_34 (Length: 217)
Name: NF19012_low_34
Description: NF19012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19012_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 31821512 - 31821702
Alignment:
| Q |
12 |
agaagaaaaagaagagaagattgtgttacctcaagaagattgtgatttgtttacagggaaatgggttcttgataatgtgacacatcctttatacaaagaa |
111 |
Q |
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| T |
31821512 |
agaagaaaaagaagagaagattgtgttacctcaagaagattgtgatttgtttacagggaaatgggttcttgataatgtgacacatcctttatacaaagaa |
31821611 |
T |
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| Q |
112 |
gaacaatgtgaatttcttacttcacaagttacatgcatgaagaatggaagaagtgattctttgtatcagaattggaggtggcagccaagag |
202 |
Q |
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| T |
31821612 |
gaacaatgtgaatttcttacttcacaagttacatgcatgaagaatggaagaagtgattctttgtatcagaattggaggtggcagccaagag |
31821702 |
T |
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Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 47 - 199
Target Start/End: Original strand, 35688453 - 35688605
Alignment:
| Q |
47 |
aagattgtgatttgtttacagggaaatgggttcttgataatgtgacacatcctttatacaaagaagaacaatgtgaatttcttacttcacaagttacatg |
146 |
Q |
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| T |
35688453 |
aagattgtgacttgttcaatggtaaatgggttttagataacgtgacacatcctttgtataaagaagatgaatgtgagtttctcacttctcaagttacatg |
35688552 |
T |
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| Q |
147 |
catgaagaatggaagaagtgattctttgtatcagaattggaggtggcagccaa |
199 |
Q |
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| T |
35688553 |
tatgaggaatggaagacgtgattctttgtatcagaattggaaatggcagccaa |
35688605 |
T |
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