View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19012_low_8 (Length: 414)
Name: NF19012_low_8
Description: NF19012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19012_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 10 - 397
Target Start/End: Original strand, 6816827 - 6817214
Alignment:
| Q |
10 |
attatactccatgttattttgtggttgagcaacaatacaaataatacctcaaactaagaccagttcggtaatcgagtttaggaaggaaaccgaaccaatt |
109 |
Q |
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| T |
6816827 |
attatactccatgttattttgtggttgagcaacaatacaaataatacctcaaactaagaccagttcggtaatcgagtttaggaaggaaaccgaaccaatt |
6816926 |
T |
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| Q |
110 |
tcaactgttataacagttcggtaaaattaaaccgaattgtaaatggttcgcccaaaatcgaacagaggctaactggtctggcataaaggtttggttcaac |
209 |
Q |
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| T |
6816927 |
tcaactgttataacagttcggtaaaattaaaccgaattgtaaatggttcgcccgaaatcgaacagaggctaactggtctggcataaaggtttggttcaac |
6817026 |
T |
|
| Q |
210 |
ggtactgtggtttcaaaccaaacttgattctttgtgaattgaactgtaccagattgctattattaactgataatcattacttctaggaaaaaccataatc |
309 |
Q |
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| T |
6817027 |
ggtactgtggtttcaaaccaaacttgattctttgtgaattgaactgtaccagattgctattattaactgataatcattacttctaggaaaaaccataatc |
6817126 |
T |
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| Q |
310 |
tgaacgaaatcggaccttaggattgtttaaatagaccaaaaaccgaattgaactgcacctaaaataaccaaactgtgatagatagttc |
397 |
Q |
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| T |
6817127 |
cgaacgaaatcggaccttaggattgtttaaatagaccaaaaaccgaattgaactgcacctaaaagaaccaaactgtgacagatagttc |
6817214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 36854703 - 36854752
Alignment:
| Q |
234 |
tgattctttgtgaattgaactgtaccagattgctattattaactgataat |
283 |
Q |
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| T |
36854703 |
tgattctttgtgaaccgaactgtaccaaattgctattcttaactgataat |
36854752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 283
Target Start/End: Original strand, 51215734 - 51215780
Alignment:
| Q |
237 |
ttctttgtgaattgaactgtaccagattgctattattaactgataat |
283 |
Q |
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| T |
51215734 |
ttctttgtgaatttaattgtaccaaattgctattattaattgataat |
51215780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 35034111 - 35034062
Alignment:
| Q |
234 |
tgattctttgtgaattgaactgtaccagattgctattattaactgataat |
283 |
Q |
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| T |
35034111 |
tgattctttgtgaaccgaactgtacaaaattgctattcttaactgataat |
35034062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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