View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19013_high_14 (Length: 264)
Name: NF19013_high_14
Description: NF19013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19013_high_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 12229296 - 12229556
Alignment:
| Q |
1 |
tcacaaatccacaacctcttccttgctctagttaaagccacatacagttgtttgagttcagagcacaaaacattatgctttgaatcgacaaaactttggc |
100 |
Q |
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| T |
12229296 |
tcacaaatccacaacctcttccttgctctagttaaagccacatacagttgtttgagttcagagcacaaaacattatgctttgaatcgacaaaactttggc |
12229395 |
T |
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| Q |
101 |
agttaatacgcgatcgagggtccaacagattcttttctttcatgtactcgtatataatcctccatcgcctttccaaaggagaagatgcaaaaaagttgta |
200 |
Q |
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| T |
12229396 |
agtta---cgcgatcgagggtccaacagattcttttctttcatgtactggtatataatcccccatcgcctttccaaaggagaagatgcaaaaaagttgta |
12229492 |
T |
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| Q |
201 |
caataacacatcctaaaaaatgcagnnnnnnnnnntcatgaaaaattgttagaaaataatagaa |
264 |
Q |
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||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
12229493 |
caataacacatcctaaaaaatgcagaaaaaaaaaatcataaaaaattgttagaaaataatagaa |
12229556 |
T |
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