View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19013_high_18 (Length: 246)
Name: NF19013_high_18
Description: NF19013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19013_high_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 41702967 - 41703182
Alignment:
| Q |
16 |
acagattaaaattggagaattggaggaaacagtaaagaagaatttggcaacgatgaatgagttgaggaatgaaagcaggaaattgacagaggagaagtgc |
115 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41702967 |
acagagtaaaattggagaattggaggaaacagtaaagaagaatttggcaacgatgaatgagttgaggaatgaaagcaggaaattgacagaggagaagtgc |
41703066 |
T |
|
| Q |
116 |
gaagtggagatattacttaaggctttgaagaggaagaggaagtttattcgagtgcgtgaaagagcagcaacattggaggaagatatcatacttttgacaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41703067 |
gaagtggagatattacttaaggctttgaagaggaacaggaagtttattcgagtgggtgaaagagcagcaacatcggaggaagatatcatacttttgacaa |
41703166 |
T |
|
| Q |
216 |
gcttagaagaggaagt |
231 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
41703167 |
gcttagaagaggaagt |
41703182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 41469579 - 41469392
Alignment:
| Q |
18 |
agattaaaattggagaattggaggaaacagtaaagaagaatttggcaacgatgaatgagttgaggaatgaaagcaggaaattgacagaggagaagtgcga |
117 |
Q |
| |
|
||||||||| || |||||| ||||||||| |||||||||||||| || ||||| ||| |||||| ||||||||||||||||| ||||||||||| |||| |
|
|
| T |
41469579 |
agattaaaaatgatgaattgaaggaaacagcaaagaagaatttggtaatgatgagtgacttgaggcatgaaagcaggaaattggcagaggagaagcgcga |
41469480 |
T |
|
| Q |
118 |
agtggagatattacttaaggctttgaagaggaagaggaagtttattcgagtgcgtgaaagagcagcaacattggaggaagatatcatacttttg |
211 |
Q |
| |
|
|| |||| ||||||| ||||||||||||| ||||||||||||| |||||||||||| | |||| |||||||||||| |||| |||||| |
|
|
| T |
41469479 |
agccgagacattacttgaggctttgaagag------gaagtttattcgactgcgtgaaagagtaacaacgttggaggaagatctcattcttttg |
41469392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 41547604 - 41547556
Alignment:
| Q |
18 |
agattaaaattggagaattggaggaaacagtaaagaagaatttggcaac |
66 |
Q |
| |
|
||||||||| ||| |||||| | ||||||||||| |||||||||||||| |
|
|
| T |
41547604 |
agattaaaaatggtgaattgaatgaaacagtaaacaagaatttggcaac |
41547556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University