View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19013_high_20 (Length: 238)
Name: NF19013_high_20
Description: NF19013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19013_high_20 |
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| [»] chr5 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 10396579 - 10396831
Alignment:
| Q |
16 |
cacttcctgcaatggtaattccaccctctcacctttgttgtgcttcat-gctctgatctttctcttgcttagatgaaacaatttcattctttat------ |
108 |
Q |
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| T |
10396579 |
cacttcctgcgatggtacttccaccctctcacctttgttgtgcttcatcgctcttatctttctcttgcttagatgaaacaatttcattctttataattat |
10396678 |
T |
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| Q |
109 |
atgaccataaatgacagcaac----------------------aacagtgg-atgcaaagacaattgctatgacaaagatgacagcaaaagttgaggtga |
185 |
Q |
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| T |
10396679 |
atcaccataaatgacagcaacaacagtgggatgaaaaaaaaaaaacagtgggatgcaaagacaattgctatgacaaagatgacagcaaaagttgaggtga |
10396778 |
T |
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| Q |
186 |
tgtgcatgcggttgacggtggtactagaatcatatgctgccacgattatgagg |
238 |
Q |
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| T |
10396779 |
tgtgcatgcggttgacagtggtactagaatcatatgctgccacgattatgagg |
10396831 |
T |
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Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 37 - 238
Target Start/End: Original strand, 38282780 - 38282978
Alignment:
| Q |
37 |
caccctctcacctttgttgtgcttcat-gctctgatctttctcttgcttagatgaaacaatttcattctttatatgaccataaatgacagcaacaacagt |
135 |
Q |
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| T |
38282780 |
caccctctcacctgttttgtgcttcattgctctaatct--ctcttgcttagatgaaacgatttctttttttatatgaccataaatgacagcaacaacagt |
38282877 |
T |
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| Q |
136 |
gg-atgcaaagacaattgctatgacaaagatgacagcaaaagttgaggtgatgtgcatgcggttgacggtggtactagaatcatatgctgccacgattat |
234 |
Q |
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| T |
38282878 |
gggacgcaaagacccttgtcgtgtcaaggatgacaacgaaaatggcggtgatgtgcatgcggtgg---gtggtactagaatcatatgttgcgccggttat |
38282974 |
T |
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Back To:
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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 8913694 - 8913821
Alignment:
| Q |
16 |
cacttcctgcaatggtaattc---caccctctcacctttgttgtgcttcatg-ctctgatctttctc----ttgcttagatgaaacaatttcattcttta |
107 |
Q |
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| T |
8913694 |
cacttcctgcaatggtacatctttcaccctctcacctttgttgtgcttcatcactctaatctctctctctcttgcttagatgaaacaatttcattcttta |
8913793 |
T |
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| Q |
108 |
tatgaccataaatgacagcaacaacagt |
135 |
Q |
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| T |
8913794 |
tatgaccgtaaaggacagcaacaacagt |
8913821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 48069231 - 48069268
Alignment:
| Q |
201 |
cggtggtactagaatcatatgctgccacgattatgagg |
238 |
Q |
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| T |
48069231 |
cggtggtactagaatcatatgctgccacgattatgagg |
48069268 |
T |
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Back To:
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