View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19013_high_26 (Length: 226)

Name: NF19013_high_26
Description: NF19013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19013_high_26
NF19013_high_26
[»] chr4 (31 HSPs)
chr4 (3-174)||(47019999-47020170)
chr4 (8-174)||(779437-779601)
chr4 (69-174)||(42118974-42119080)
chr4 (69-173)||(52789395-52789500)
chr4 (69-173)||(43502267-43502372)
chr4 (69-173)||(33985431-33985536)
chr4 (77-174)||(37694493-37694591)
chr4 (87-174)||(52032683-52032771)
chr4 (8-86)||(34939480-34939558)
chr4 (77-174)||(45042990-45043088)
chr4 (72-173)||(54808986-54809088)
chr4 (69-158)||(54703637-54703726)
chr4 (81-172)||(34939342-34939434)
chr4 (87-173)||(51242828-51242915)
chr4 (8-87)||(42118863-42118941)
chr4 (8-88)||(54703525-54703605)
chr4 (14-133)||(32935629-32935747)
chr4 (8-87)||(45043111-45043190)
chr4 (7-84)||(52789282-52789359)
chr4 (8-88)||(36047011-36047091)
chr4 (8-88)||(37694631-37694711)
chr4 (69-156)||(9242920-9243006)
chr4 (8-49)||(33983756-33983797)
chr4 (8-49)||(43501716-43501757)
chr4 (8-49)||(52790466-52790507)
chr4 (8-88)||(52032802-52032882)
chr4 (69-114)||(27761173-27761217)
chr4 (8-88)||(33985568-33985649)
chr4 (8-49)||(38131326-38131367)
chr4 (69-114)||(49065594-49065638)
chr4 (16-88)||(2777870-2777942)
[»] chr1 (28 HSPs)
chr1 (8-174)||(49150483-49150650)
chr1 (8-174)||(15399008-15399175)
chr1 (68-173)||(33686526-33686632)
chr1 (71-173)||(7014756-7014859)
chr1 (69-173)||(43138631-43138736)
chr1 (77-174)||(1671308-1671405)
chr1 (8-88)||(12926715-12926795)
chr1 (77-158)||(12926835-12926916)
chr1 (8-88)||(10308361-10308441)
chr1 (71-170)||(22605440-22605540)
chr1 (72-158)||(10308476-10308561)
chr1 (70-170)||(49597193-49597293)
chr1 (8-88)||(33296425-33296505)
chr1 (8-88)||(33686663-33686743)
chr1 (72-170)||(41871735-41871833)
chr1 (7-82)||(43138774-43138849)
chr1 (88-156)||(30858515-30858583)
chr1 (6-49)||(4199105-4199148)
chr1 (8-47)||(49000853-49000892)
chr1 (68-134)||(20447164-20447230)
chr1 (68-134)||(20532927-20532993)
chr1 (8-49)||(23941468-23941509)
chr1 (8-49)||(39222590-39222631)
chr1 (8-49)||(43514925-43514966)
chr1 (8-80)||(12068020-12068092)
chr1 (8-88)||(22605326-22605406)
chr1 (14-46)||(41871626-41871658)
chr1 (69-145)||(47983681-47983756)
[»] chr5 (15 HSPs)
chr5 (8-158)||(7662202-7662352)
chr5 (69-173)||(1081870-1081975)
chr5 (69-173)||(18172117-18172222)
chr5 (68-173)||(12144045-12144151)
chr5 (69-147)||(2786732-2786810)
chr5 (69-173)||(34954048-34954153)
chr5 (69-141)||(43147441-43147513)
chr5 (77-174)||(40033982-40034081)
chr5 (8-88)||(18172254-18172334)
chr5 (26-88)||(24531047-24531109)
chr5 (8-76)||(14804362-14804430)
chr5 (16-88)||(2786628-2786700)
chr5 (72-134)||(10532795-10532856)
chr5 (8-86)||(15106416-15106494)
chr5 (8-88)||(1082007-1082086)
[»] chr8 (23 HSPs)
chr8 (69-174)||(4759190-4759295)
chr8 (72-174)||(1217794-1217897)
chr8 (68-158)||(9039664-9039754)
chr8 (8-86)||(1217679-1217757)
chr8 (8-85)||(42182548-42182625)
chr8 (8-80)||(23810900-23810972)
chr8 (69-160)||(5913112-5913203)
chr8 (78-156)||(42182669-42182747)
chr8 (81-158)||(4322708-4322785)
chr8 (8-88)||(4759327-4759407)
chr8 (37-174)||(2766844-2766982)
chr8 (80-158)||(35161617-35161694)
chr8 (8-88)||(15743308-15743388)
chr8 (8-73)||(5913980-5914045)
chr8 (8-88)||(9039553-9039633)
chr8 (108-158)||(15739705-15739755)
chr8 (7-49)||(23542901-23542943)
chr8 (100-157)||(23810856-23810912)
chr8 (16-84)||(35161503-35161571)
chr8 (69-111)||(15743234-15743276)
chr8 (8-89)||(5015367-5015447)
chr8 (8-49)||(43693723-43693764)
chr8 (9-49)||(37226988-37227028)
[»] chr3 (12 HSPs)
chr3 (7-173)||(2447532-2447699)
chr3 (69-174)||(49303208-49303314)
chr3 (69-173)||(49501514-49501619)
chr3 (72-173)||(41649949-41650051)
chr3 (69-158)||(49742097-49742186)
chr3 (68-173)||(23029646-23029752)
chr3 (8-85)||(49501654-49501731)
chr3 (8-88)||(37282843-37282923)
chr3 (72-170)||(25574829-25574927)
chr3 (7-87)||(47560497-47560577)
chr3 (61-170)||(39415336-39415446)
chr3 (61-134)||(48086833-48086906)
[»] chr2 (28 HSPs)
chr2 (69-174)||(5290682-5290787)
chr2 (69-174)||(4616619-4616725)
chr2 (69-174)||(26257757-26257863)
chr2 (69-173)||(32737854-32737959)
chr2 (72-173)||(41192365-41192467)
chr2 (77-173)||(5814517-5814614)
chr2 (69-173)||(34619883-34619988)
chr2 (9-87)||(4616758-4616836)
chr2 (86-173)||(6728635-6728723)
chr2 (6-90)||(34619999-34620083)
chr2 (69-173)||(1887918-1888023)
chr2 (69-173)||(21083768-21083872)
chr2 (77-174)||(2195149-2195246)
chr2 (8-88)||(41192502-41192582)
chr2 (9-87)||(5290820-5290897)
chr2 (69-174)||(37057199-37057305)
chr2 (9-88)||(6728507-6728586)
chr2 (8-85)||(32737994-32738071)
chr2 (16-88)||(1887814-1887886)
chr2 (8-88)||(29132754-29132834)
chr2 (29-82)||(26257886-26257939)
chr2 (40-88)||(5814655-5814703)
chr2 (70-114)||(37891765-37891809)
chr2 (61-170)||(29908493-29908603)
chr2 (71-136)||(12874244-12874308)
chr2 (8-49)||(19380291-19380332)
chr2 (31-88)||(21083679-21083736)
chr2 (13-49)||(28030431-28030467)
[»] scaffold0051 (2 HSPs)
scaffold0051 (68-173)||(20092-20198)
scaffold0051 (8-90)||(20001-20082)
[»] chr7 (14 HSPs)
chr7 (69-174)||(39283989-39284095)
chr7 (8-173)||(14678225-14678409)
chr7 (69-158)||(4035150-4035239)
chr7 (7-88)||(39283876-39283957)
chr7 (68-173)||(37450001-37450107)
chr7 (87-173)||(3742352-3742439)
chr7 (70-155)||(40144784-40144869)
chr7 (69-134)||(8260879-8260944)
chr7 (8-88)||(4035271-4035351)
chr7 (70-132)||(30362750-30362812)
chr7 (60-134)||(27874048-27874122)
chr7 (8-49)||(14679280-14679321)
chr7 (9-49)||(34354515-34354555)
chr7 (61-156)||(41219376-41219471)
[»] chr6 (8 HSPs)
chr6 (68-172)||(3515201-3515306)
chr6 (69-173)||(11599019-11599124)
chr6 (71-174)||(30634096-30634200)
chr6 (8-88)||(30634234-30634314)
chr6 (8-85)||(11598907-11598984)
chr6 (8-67)||(3515359-3515419)
chr6 (29-134)||(17398993-17399097)
chr6 (8-49)||(11600015-11600056)
[»] scaffold0753 (1 HSPs)
scaffold0753 (69-156)||(3998-4085)
[»] scaffold0861 (1 HSPs)
scaffold0861 (8-84)||(3848-3924)
[»] scaffold0217 (1 HSPs)
scaffold0217 (69-156)||(25598-25685)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 3 - 174
Target Start/End: Original strand, 47019999 - 47020170
Alignment:
Q  3 aatcggaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgcaccactgagcctctg 102  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47019999 aatcggaattttgctcttcacccagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgcaccactgagcctctg 47020098  T
Q  103 cgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttctggacggtggtcaatgc 174  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||    
T  47020099 cgcgagttaacttgcgcaagttggacggtggtaaaaactgaagcaaaaacgtttctgaacggtggacaatgc 47020170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 779601 - 779437
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgcaccactgagcctctgcgcga 107  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||| |||| ||   ||||||||||| ||||||||||| ||| |    
T  779601 gaattttgctcttcacctagcacatttcgctcgcgccctacatgtttttcaaatataaccctgcgcga---aagtcacgcacaactgagcctcttcgcaa 779505  T
Q  108 gttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct-ggacggtggtcaatgc 174  Q
    ||||||||||||||||||| |||||||||||| | |||||  ||||||| | ||||||||||||||||    
T  779504 gttaacttgcgcaagttggccggtggtaaaaattgaagcattaacgtttttgggacggtggtcaatgc 779437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 69 - 174
Target Start/End: Original strand, 42118974 - 42119080
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct-ggacggtgg 167  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||| |||||||| | |||||||||    
T  42118974 tgcgtgacttaagtcacgcaccactgagcctctacgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttttgggacggtgg 42119073  T
Q  168 tcaatgc 174  Q
    |||||||    
T  42119074 tcaatgc 42119080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 52789395 - 52789500
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtgg 167  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |||||||| |    
T  52789395 tgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttggtcggtggtaaaaactgaagcacaaacgtttcttggacggtag 52789494  T
Q  168 tcaatg 173  Q
    ||||||    
T  52789495 tcaatg 52789500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 43502372 - 43502267
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtgg 167  Q
    ||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |||||||| |    
T  43502372 tgcgtgacttaagtcgcgcaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttcttggacggtag 43502273  T
Q  168 tcaatg 173  Q
    ||||||    
T  43502272 tcaatg 43502267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 33985536 - 33985431
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtgg 167  Q
    ||||||| |||||||||||| |||  |||||||||||||||||||||||||||||||| |||| ||||||||| ||||| ||||||||| ||||||||||    
T  33985536 tgcgtgacttaagtcacgcaacacaaagcctctgcgcgagttaacttgcgcaagttggccggtagtaaaaactgaagcacaaacgtttcttggacggtgg 33985437  T
Q  168 tcaatg 173  Q
    ||||||    
T  33985436 tcaatg 33985431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 37694591 - 37694493
Alignment:
Q  77 ttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct-ggacggtggtcaatgc 174  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||| ||||| | |||||| | ||||| ||||||||||    
T  37694591 ttaagtcacgcaccactgagcctctacgcgagttaacctgcgcaagttggccggtggtaaaaactgaagcacagacgtttttgggacgatggtcaatgc 37694493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 87 - 174
Target Start/End: Complemental strand, 52032771 - 52032683
Alignment:
Q  87 caccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct-ggacggtggtcaatgc 174  Q
    ||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||| |||||||| | |||||||||| |||||    
T  52032771 caccactgagcctatgcgcgagttaacttgcgcaaattggccggtggtaaaaactaaagcacaaacgtttttgggacggtggtaaatgc 52032683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 34939558 - 34939480
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacg 86  Q
    ||||||||||||||||  |||||||||||||||||||||||||| ||| ||||||| ||| ||||||||||||||||||    
T  34939558 gaattttgctcttcactcagcacatttcgctcgcgccctgcatgattttcaaatatgaccctgcgtgagttaagtcacg 34939480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 45043088 - 45042990
Alignment:
Q  77 ttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct-ggacggtggtcaatgc 174  Q
    |||||||||||||||||||||||||  | ||||||||||||| ||||||| |||||||||||||| ||||| |||||||| | |||||||||| |||||    
T  45043088 ttaagtcacgcaccactgagcctctatgtgagttaacttgcgtaagttggccggtggtaaaaactgaagcacaaacgtttttgggacggtggtgaatgc 45042990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 72 - 173
Target Start/End: Complemental strand, 54809088 - 54808986
Alignment:
Q  72 gtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtggtca 170  Q
    |||| ||||||| | ||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || || |||| |||| |||||||| ||||    
T  54809088 gtgacttaagtcgcacaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaaccacaaacatttcttggacggtagtca 54808989  T
Q  171 atg 173  Q
    |||    
T  54808988 atg 54808986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 69 - 158
Target Start/End: Original strand, 54703637 - 54703726
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct 158  Q
    ||||||| ||||||| |||||||||| |||| || ||||||||||||||||||||||| |||||||||||||| ||| | ||||||||||    
T  54703637 tgcgtgacttaagtcgcgcaccactgggcctatgtgcgagttaacttgcgcaagttggtcggtggtaaaaactgaagaacaaacgtttct 54703726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 81 - 172
Target Start/End: Complemental strand, 34939434 - 34939342
Alignment:
Q  81 gtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtggtcaat 172  Q
    |||||||| |||||||||| ||||||||||||||| |||||||||| ||||||||||||||  |||| ||||||||| || ||||||||||||    
T  34939434 gtcacgcaacactgagcctatgcgcgagttaacttccgcaagttggccggtggtaaaaactgcagcacaaacgtttcttgaacggtggtcaat 34939342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 87 - 173
Target Start/End: Original strand, 51242828 - 51242915
Alignment:
Q  87 caccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacg-tttctggacggtggtcaatg 173  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||| |||||| ||||| ||||| ||| |||||||| |||||||    
T  51242828 caccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtcaaaactgaagcataaacgttttttggacggtagtcaatg 51242915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 42118863 - 42118941
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgc 87  Q
    ||||||||||||||| | |||||||| || |||||||||| ||||||| ||||||||||| |||||||||||||||||||    
T  42118863 gaattttgctcttcatccagcacatt-cgttcgcgccctgaatgtttttcaaatataaccctgcgtgagttaagtcacgc 42118941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 54703525 - 54703605
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 88  Q
    ||||| |||||||||||  |||||||| ||||||||||||||  |||| ||||||||||| |||||||||||||| |||||    
T  54703525 gaattctgctcttcaccctgcacattttgctcgcgccctgcacttttttcaaatataaccctgcgtgagttaagtaacgca 54703605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 32935629 - 32935747
Alignment:
Q  14 tgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaac 113  Q
    |||||||| || |||||||||||||||| |||||||    |||| |||||| || ||||| |||||||||||||||||||  |||| |||||||||||||    
T  32935629 tgctcttcccccagcacatttcgctcgcaccctgcagccattcctaatatacccctgcgttagttaagtcacgcaccact-tgcctatgcgcgagttaac 32935727  T
Q  114 ttgcgcaagttggacggtgg 133  Q
    |  |||| ||||| ||||||    
T  32935728 tcacgcacgttggccggtgg 32935747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 45043190 - 45043111
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgc 87  Q
    |||||||| | |||||| ||||||||||||||||||| ||||||||||| |||||||| | | || ||||||||||||||    
T  45043190 gaattttgtttttcacccagcacatttcgctcgcgccttgcatgttttctaaatataatcctacgcgagttaagtcacgc 45043111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 52789282 - 52789359
Alignment:
Q  7 ggaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtca 84  Q
    |||||| |||| |||||| || |||||||||||||||||||||  ||||  |||||| | ||||||||||||||||||    
T  52789282 ggaattctgcttttcacccagaacatttcgctcgcgccctgcacattttttaaatatgatcttgcgtgagttaagtca 52789359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 36047091 - 36047011
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 88  Q
    ||||| |||||||||||  |||||||| ||| ||||||||||  |||| | ||||||||| |||||||||||||| |||||    
T  36047091 gaattctgctcttcaccctgcacattttgcttgcgccctgcacttttttcgaatataaccctgcgtgagttaagtaacgca 36047011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 37694711 - 37694631
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 88  Q
    |||||||||||| | || ||||||   | |||||||||  ||||||||||||||||| || ||||||||||||||||||||    
T  37694711 gaattttgctctccccccagcacaaaacactcgcgcccaccatgttttccaaatatacccctgcgtgagttaagtcacgca 37694631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 156
Target Start/End: Complemental strand, 9243006 - 9242920
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgttt 156  Q
    ||||||| ||||||||||||||||||||||| | ||||||||||||  |||||||||| |||| || | |||| ||| | ||||||||    
T  9243006 tgcgtgacttaagtcacgcaccactgagcct-tccgcgagttaactcacgcaagttggccggtagtcagaactgaagaacaaacgttt 9242920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 33983756 - 33983797
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgca 49  Q
    ||||||||||||||||| |||||||||||||||| |||||||    
T  33983756 gaattttgctcttcacccagcacatttcgctcgcaccctgca 33983797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 43501716 - 43501757
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgca 49  Q
    ||||||||||||||||| |||||||||||||||| |||||||    
T  43501716 gaattttgctcttcacccagcacatttcgctcgcaccctgca 43501757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 52790507 - 52790466
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgca 49  Q
    ||||||||||||||||| |||||||||||||||| |||||||    
T  52790507 gaattttgctcttcacccagcacatttcgctcgcaccctgca 52790466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 52032882 - 52032802
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 88  Q
    ||||| |||||||||||  ||||||||  |||||||| ||||  |||| ||||| | ||| ||||||||||||||||||||    
T  52032882 gaattctgctcttcaccctgcacattttactcgcgccttgcacttttttcaaatttgaccctgcgtgagttaagtcacgca 52032802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 27761217 - 27761173
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaact 114  Q
    ||||||| ||||||||||||||||| ||||| ||||||||||||||    
T  27761217 tgcgtgacttaagtcacgcaccact-agcctatgcgcgagttaact 27761173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 33985649 - 33985568
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcg-ccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 88  Q
    ||||| ||||||||| | ||||||||| ||||||  |||||||  |||| |||||||| | ||| |||||||||||||||||    
T  33985649 gaattctgctcttcatccagcacattttgctcgcatccctgcacatttttcaaatatacctttgtgtgagttaagtcacgca 33985568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 38131326 - 38131367
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgca 49  Q
    |||| |||||||||||| ||||||||| ||||||||||||||    
T  38131326 gaatgttgctcttcacccagcacattttgctcgcgccctgca 38131367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 49065638 - 49065594
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaact 114  Q
    ||||||| |||||||||||||||||| |||| ||||||||||||||    
T  49065638 tgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 49065594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 2777870 - 2777942
Alignment:
Q  16 ctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 88  Q
    |||||| || ||||||||| ||||||||||  |||  ||||||  |||| |||| ||||||||||||||||||    
T  2777870 ctcttctcccagcacattttgctcgcgcccaacataatttccagttatacccttacgtgagttaagtcacgca 2777942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 9e-57; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 49150483 - 49150650
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgcaccactgagcctctgcgcga 107  Q
    ||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||     
T  49150483 gaattttgctcttcacccagcatatttcgctcgcgtcctgcatgttttccaaatataaccctgtgtgagttaagtcacgcaccactgagcctctgcgcgc 49150582  T
Q  108 gttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct-ggacggtggtcaatgc 174  Q
    ||| |||||||||| |||| |||||||||||||| ||||| |||||||||| ||||||||| ||||||    
T  49150583 gttgacttgcgcaaattggccggtggtaaaaacttaagcataaacgtttctgggacggtggccaatgc 49150650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 15399008 - 15399175
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgcaccactgagcctctgcgcga 107  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||| | |||||||||||||||||||||||| ||| ||||||||||    
T  15399008 gaattttgctcttcacccagcacatttcgctcacgccctgcatgtttttcaaatataatcctgcgtgagttaagtcacgcaccaccgagtctctgcgcga 15399107  T
Q  108 gttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct-ggacggtggtcaatgc 174  Q
    |||||||| ||||||||||| ||||||||||| | ||||| |||||||| | ||||||| ||||||||    
T  15399108 gttaacttacgcaagttggatggtggtaaaaattgaagcacaaacgtttatgggacggttgtcaatgc 15399175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 68 - 173
Target Start/End: Complemental strand, 33686632 - 33686526
Alignment:
Q  68 ttgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtg 166  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||||| ||| ||||| ||||||||     
T  33686632 ttgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgtaagttggccggtggtaaaaactgaagcacaaatgtttcttggacggta 33686533  T
Q  167 gtcaatg 173  Q
    |||||||    
T  33686532 gtcaatg 33686526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 71 - 173
Target Start/End: Complemental strand, 7014859 - 7014756
Alignment:
Q  71 cgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtggtc 169  Q
    ||||| ||||||||||||||||| ||| | |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |||||||| |||    
T  7014859 cgtgacttaagtcacgcaccactaagcatatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttcttggacggtagtc 7014760  T
Q  170 aatg 173  Q
    ||||    
T  7014759 aatg 7014756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 43138736 - 43138631
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtgg 167  Q
    ||||||| ||||||| ||||||||||||||| ||||||||||||||||||||| |||| ||||| |||||||| ||||| ||||||||| |||||||| |    
T  43138736 tgcgtgatttaagtcgcgcaccactgagcctatgcgcgagttaacttgcgcaaattggccggtgataaaaactgaagcacaaacgtttcttggacggtag 43138637  T
Q  168 tcaatg 173  Q
    ||||||    
T  43138636 tcaatg 43138631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 1671405 - 1671308
Alignment:
Q  77 ttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttctggacggtggtcaatgc 174  Q
    |||||||||| ||||||||||||||||||||||||||   |||||||||| ||||||| |||||| ||| | |||||||| |||||||||||||||||    
T  1671405 ttaagtcacgaaccactgagcctctgcgcgagttaacgcacgcaagttggtcggtggtcaaaactgaagaacaaacgtttttggacggtggtcaatgc 1671308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 12926715 - 12926795
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 88  Q
    |||||||||||||||||  |||||||| |||| |||||||||  |||||||||||||||| ||||||||||||||||||||    
T  12926715 gaattttgctcttcaccctgcacattttgctcccgccctgcactttttccaaatataaccctgcgtgagttaagtcacgca 12926795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 12926835 - 12926916
Alignment:
Q  77 ttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct 158  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||    ||||||||||| ||||| ||||||||||    
T  12926835 ttaagtcatgcaccactgagcctatgcgcgagttaacttgcgcaagttggctaatggtaaaaactgaagcacaaacgtttct 12926916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 10308361 - 10308441
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 88  Q
    ||||| |||||||||||  |||||||| ||||||||||||||  ||||| |||||||||| ||||||||||||||||||||    
T  10308361 gaattctgctcttcaccctgcacattttgctcgcgccctgcacattttctaaatataaccctgcgtgagttaagtcacgca 10308441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 71 - 170
Target Start/End: Original strand, 22605440 - 22605540
Alignment:
Q  71 cgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacg-tttctggacggtggtc 169  Q
    ||||| ||||||||||||||| ||||||||| | |||||||||||||||||||| | |||||||||||||| ||| | | ||| ||| ||||||||||||    
T  22605440 cgtgacttaagtcacgcaccattgagcctctacacgagttaacttgcgcaagttagccggtggtaaaaactgaagaatatacgttttttggacggtggtc 22605539  T
Q  170 a 170  Q
    |    
T  22605540 a 22605540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 158
Target Start/End: Original strand, 10308476 - 10308561
Alignment:
Q  72 gtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct 158  Q
    |||| |||||||||||||||||| || | |||| ||||||||||||||||||||| |||||||||| ||| ||||| |||| |||||    
T  10308476 gtgacttaagtcacgcaccactg-gcatgtgcgtgagttaacttgcgcaagttggccggtggtaaacactgaagcacaaacatttct 10308561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 170
Target Start/End: Original strand, 49597193 - 49597293
Alignment:
Q  70 gcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacg-tttctggacggtggt 168  Q
    |||||| |||||||||||||||||| |||| ||||||||||||||  |||| ||||| ||||||| | |||||||| | ||||| ||| |||||||||||    
T  49597193 gcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaactcacgcacgttggtcggtggtcagaactaaagaacaaacgatttttggacggtggt 49597291  T
Q  169 ca 170  Q
    ||    
T  49597292 ca 49597293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 33296425 - 33296505
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 88  Q
    ||||| ||||||||| | ||||||||| ||||||||||| ||| | |||||||| || |||||||| |||||| |||||||    
T  33296425 gaattctgctcttcatccagcacattttgctcgcgccctacatctgttccaaatttacccttgcgttagttaactcacgca 33296505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 33686743 - 33686663
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 88  Q
    ||||| ||||||||| |  |||||||| ||||||| ||||||  ||||||||||||||   ||||||||||||||||||||    
T  33686743 gaattctgctcttcatcctgcacattttgctcgcgtcctgcactttttccaaatataattctgcgtgagttaagtcacgca 33686663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 170
Target Start/End: Original strand, 41871735 - 41871833
Alignment:
Q  72 gtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacg-tttctggacggtggtca 170  Q
    |||| |||||| ||||||||||| |||| ||||||||||||||  |||| ||||| ||||||||| |||| ||| | ||||| ||| |||||||||||||    
T  41871735 gtgacttaagtaacgcaccactg-gcctatgcgcgagttaactcacgcacgttggccggtggtaagaactgaagaacaaacgttttttggacggtggtca 41871833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 43138849 - 43138774
Alignment:
Q  7 ggaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagt 82  Q
    |||||| ||||||||||| |||||||||  |||| ||||||||  ||||| |||||||| | ||||||||||||||    
T  43138849 ggaattctgctcttcacctagcacattttactcgtgccctgcactttttctaaatataatcatgcgtgagttaagt 43138774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 30858515 - 30858583
Alignment:
Q  88 accactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgttt 156  Q
    |||| ||||||||| |||||||||||| ||||||||||| ||||||| ||| || ||| | ||||||||    
T  30858515 accattgagcctctacgcgagttaactcgcgcaagttggccggtggtcaaagctgaagaacaaacgttt 30858583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 4199148 - 4199105
Alignment:
Q  6 cggaattttgctcttcaccgagcacatttcgctcgcgccctgca 49  Q
    ||||||||||||||||||| | ||||||| ||||||||||||||    
T  4199148 cggaattttgctcttcacccaacacattttgctcgcgccctgca 4199105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 49000892 - 49000853
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctg 47  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  49000892 gaattttgctcttcacccagcacattttgctcgcgccctg 49000853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 20447164 - 20447230
Alignment:
Q  68 ttgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggt 134  Q
    |||||||| |||||| ||||||| ||||||||  |||||||||||||  ||| |||||| |||||||    
T  20447164 ttgcgtgacttaagttacgcacccctgagccttcgcgcgagttaactcacgctagttggtcggtggt 20447230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 20532927 - 20532993
Alignment:
Q  68 ttgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggt 134  Q
    |||||||| |||||| ||||||| ||||||||  |||||||||||||  ||| |||||| |||||||    
T  20532927 ttgcgtgacttaagttacgcacccctgagccttcgcgcgagttaactcacgctagttggtcggtggt 20532993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 23941468 - 23941509
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgca 49  Q
    ||||| |||||||| || ||||||||||||||||||||||||    
T  23941468 gaattctgctcttctcccagcacatttcgctcgcgccctgca 23941509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 39222590 - 39222631
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgca 49  Q
    |||||||||||||||||  |||||||| ||||||||||||||    
T  39222590 gaattttgctcttcaccctgcacattttgctcgcgccctgca 39222631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 43514966 - 43514925
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgca 49  Q
    ||||| ||||||||||| ||||| ||||||||||||||||||    
T  43514966 gaattatgctcttcacccagcacttttcgctcgcgccctgca 43514925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 12068092 - 12068020
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaa 80  Q
    ||||| |||||| |||| ||||||||| ||||||||||||||    |||||||| || |||||||| ||||||    
T  12068092 gaattatgctctccacccagcacattttgctcgcgccctgcagccgttccaaatttatccttgcgttagttaa 12068020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 22605326 - 22605406
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 88  Q
    ||||| |||||||| || ||||||   | |||||||||  ||||||||| |||||||||| | ||||||||||||| ||||    
T  22605326 gaattctgctcttcccccagcacaaaacactcgcgcccaacatgttttctaaatataaccctacgtgagttaagtcgcgca 22605406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 41871626 - 41871658
Alignment:
Q  14 tgctcttcaccgagcacatttcgctcgcgccct 46  Q
    ||||||||||||||||||||| |||||||||||    
T  41871626 tgctcttcaccgagcacattttgctcgcgccct 41871658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 47983681 - 47983756
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaag 145  Q
    |||||||||||||||||  ||||||| || | ||||||||||||||  |||| ||||| ||||||| | ||||||||    
T  47983681 tgcgtgagttaagtcacttaccactg-gcatgtgcgcgagttaactgacgcacgttggccggtggtcagaactaaag 47983756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 7e-42; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 7662352 - 7662202
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgcaccactgagcctctgcgcga 107  Q
    ||||| ||||||||| |  | ||||||  |||||||||||||  |||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  7662352 gaattctgctcttcatcctgaacattttactcgcgccctgcacatttttcaaatatgaccttgcgtgagttaagtcacgcaccactgagcctatgcgcga 7662253  T
Q  108 gttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct 158  Q
     |||||||||||||||||| |||||||||||||| ||||| ||||||||||    
T  7662252 tttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttct 7662202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 1081975 - 1081870
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtgg 167  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||| ||||| ||||||||| |||||||| |    
T  1081975 tgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttgaccggtggtaaaaactgaagcacaaacgtttcttggacggtag 1081876  T
Q  168 tcaatg 173  Q
    ||||||    
T  1081875 tcaatg 1081870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 18172222 - 18172117
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtgg 167  Q
    ||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |||||||| |    
T  18172222 tgcgtgacttaagtcacgcaccactgagcttatgcgcgagttaacttgcgcaagttggtcggtggtaaaaactgaagcacaaacgtttcttggacggtag 18172123  T
Q  168 tcaatg 173  Q
    ||||||    
T  18172122 tcaatg 18172117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 173
Target Start/End: Original strand, 12144045 - 12144151
Alignment:
Q  68 ttgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtg 166  Q
    |||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| | ||| |||||||| ||||| ||||||||| ||||||||     
T  12144045 ttgcgtgacttaagtcacgcaccactgagcctatgcacgagttaacttgcgcaagttggtcagtgttaaaaactgaagcacaaacgtttcttggacggta 12144144  T
Q  167 gtcaatg 173  Q
    |||||||    
T  12144145 gtcaatg 12144151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 2786732 - 2786810
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagca 147  Q
    ||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||    
T  2786732 tgcgtgacttaagtcatgcaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaagca 2786810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 34954048 - 34954153
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtgg 167  Q
    ||||||| |||||||  |||||||||||||| ||||||||||||||||| ||||||||  ||||||||||||| ||||| ||||||||| |||||||| |    
T  34954048 tgcgtgacttaagtcgtgcaccactgagcctatgcgcgagttaacttgcacaagttggctggtggtaaaaactgaagcacaaacgtttcttggacggtag 34954147  T
Q  168 tcaatg 173  Q
    ||||||    
T  34954148 tcaatg 34954153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 43147513 - 43147441
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaact 141  Q
    ||||||| ||||||||||||||||||||||||| | |||||||||| ||||||||||| ||||||||||||||    
T  43147513 tgcgtgacttaagtcacgcaccactgagcctctacacgagttaactcgcgcaagttggccggtggtaaaaact 43147441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 40034081 - 40033982
Alignment:
Q  77 ttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggta-aaaactaaagcaaaaacg-tttctggacggtggtcaatgc 174  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||| |||||| ||| | ||| | ||| |||||||||||||||||    
T  40034081 ttaagtcacgcaccactgagcctctacgcgagttaactcgcgcaagttggtcggtggtaaaaaactgaagaacaaatgttttttggacggtggtcaatgc 40033982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 18172334 - 18172254
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 88  Q
    |||||||||||||||||  |||||||| | ||||||||||||  ||||  |||||| ||||||||||||||||||||||||    
T  18172334 gaattttgctcttcaccttgcacattttgttcgcgccctgcacattttttaaatatgaccttgcgtgagttaagtcacgca 18172254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 24531109 - 24531047
Alignment:
Q  26 agcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 88  Q
    ||||||||| ||||||| || ||||| |||||||||||| || ||||||||||||||||||||    
T  24531109 agcacattttgctcgcgtccagcatgatttccaaatatacccctgcgtgagttaagtcacgca 24531047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 14804430 - 14804362
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgag 76  Q
    ||||||||||||||||| |||||||| |||| |||| |  ||||||||| |||||||||| ||||||||    
T  14804430 gaattttgctcttcacccagcacattccgcttgcgctcaacatgttttctaaatataaccctgcgtgag 14804362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 2786628 - 2786700
Alignment:
Q  16 ctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 88  Q
    |||||||||  |||||||| |||||||| |||||   |||||||||| |||| ||||||||||||||| ||||    
T  2786628 ctcttcaccctgcacattttgctcgcgctctgcactctttccaaatacaaccctgcgtgagttaagtcgcgca 2786700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 10532795 - 10532856
Alignment:
Q  72 gtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggt 134  Q
    ||||||||||||| ||||||||| || | ||||||||||||||  |||||||||| |||||||    
T  10532795 gtgagttaagtcatgcaccactg-gcttgtgcgcgagttaactcacgcaagttggccggtggt 10532856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 15106494 - 15106416
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacg 86  Q
    ||||||||||||||||| |||||||||||||| | |||||||   || || || ||| || ||||||| ||||||||||    
T  15106494 gaattttgctcttcacccagcacatttcgctcccaccctgcagccttacccaaaatacccatgcgtgacttaagtcacg 15106416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 1082086 - 1082007
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 88  Q
    ||||| |||| ||||||  |||||||| | ||||||||||||  |||||||||| | ||| || |||||||||||||||||    
T  1082086 gaattctgctattcaccctgcacattttg-tcgcgccctgcactttttccaaatttgaccctgtgtgagttaagtcacgca 1082007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 69 - 174
Target Start/End: Complemental strand, 4759295 - 4759190
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttctggacggtggt 168  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |    
T  4759295 tgcgtgacttaagtcatgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactgaagcacaaacgtttctggacggtgtt 4759196  T
Q  169 caatgc 174  Q
    ||||||    
T  4759195 caatgc 4759190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 1217794 - 1217897
Alignment:
Q  72 gtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct-ggacggtggtca 170  Q
    |||| |||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||| || || |||||||||| ||||||||||||    
T  1217794 gtgacttaagtcacgcaccaccgagcctctgcgcgagttgacttgcgcaagttggccggtggtaaaaactgaaacacaaacgtttctgggacggtggtca 1217893  T
Q  171 atgc 174  Q
    ||||    
T  1217894 atgc 1217897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 68 - 158
Target Start/End: Original strand, 9039664 - 9039754
Alignment:
Q  68 ttgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct 158  Q
    |||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||    
T  9039664 ttgcgtgacttaagtcacacaccactgaacctctgcgcgagttaacttgcgcaagttggccggtggtaaaaactacagcacaaacgtttct 9039754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 1217679 - 1217757
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacg 86  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  1217679 gaattttgctcttcactcagcacatttcgctcgcgccctgcatgttttccaaatataaccctgtgtgagttaagtcacg 1217757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 42182548 - 42182625
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcac 85  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  42182548 gaattttgctcttcacccaacacatttcgctcgcgccctgcatgttttccaaatataatcctgcgtgagttaagtcac 42182625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 23810972 - 23810900
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaa 80  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23810972 gaatttttctcttcacccagcacatttcgctcgcgccctgcatgttttccaaatataaccctgcgtgagttaa 23810900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 69 - 160
Target Start/End: Complemental strand, 5913203 - 5913112
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttctgg 160  Q
    ||||||| ||||||||| ||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||    
T  5913203 tgcgtgacttaagtcacacaccattgagcctctgtgcgagttaactcgcgcaagttggccggtggtaaaaactgaagcacaaacgtttctgg 5913112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 42182669 - 42182747
Alignment:
Q  78 taagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgttt 156  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  42182669 taagtcacgcaccactgagtctctacgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgttt 42182747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 4322708 - 4322785
Alignment:
Q  81 gtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct 158  Q
    ||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||| ||||| ||| ||||||    
T  4322708 gtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttgaccggtggtaaaaactgaagcacaaatgtttct 4322785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 4759407 - 4759327
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 88  Q
    ||||||||||||||||| ||||||||| ||||||||||  |||||||| ||||||||||| ||||| ||||||||||||||    
T  4759407 gaattttgctcttcacctagcacattttgctcgcgcccaacatgtttttcaaatataaccctgcgtaagttaagtcacgca 4759327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 174
Target Start/End: Complemental strand, 2766982 - 2766844
Alignment:
Q  37 ctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaa 136  Q
    |||||||||  |||| |||||||||||| || |||||||||| ||||||  |||||||| ||||||| |||||||||   |||||||||| | ||||| |    
T  2766982 ctcgcgcccaacatgatttccaaatatacccatgcgtgagtttagtcacaaaccactgaacctctgcacgagttaacgcacgcaagttggccagtggtca 2766883  T
Q  137 aaactaaagcaaaaacg-tttctggacggtggtcaatgc 174  Q
    ||||| ||| | ||||| ||| |||||||||||||||||    
T  2766882 aaactgaagaacaaacgttttttggacggtggtcaatgc 2766844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 35161617 - 35161694
Alignment:
Q  80 agtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct 158  Q
    |||||||||||||||||||| |||||||||||||||||||||||||  ||||||| |||||| ||||| ||||||||||    
T  35161617 agtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttgaccggtggt-aaaactgaagcacaaacgtttct 35161694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 15743388 - 15743308
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 88  Q
    ||||| |||||||||||  |||||||| ||||||||||||||  |||||||||||||| | || |||||||||||||||||    
T  15743388 gaattctgctcttcaccctgcacattttgctcgcgccctgcactttttccaaatataatcctgtgtgagttaagtcacgca 15743308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 5914045 - 5913980
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgt 73  Q
    ||||||| ||||||||| ||||||||||||| |||||||||||||||| ||||||| ||| |||||    
T  5914045 gaatttttctcttcacccagcacatttcgcttgcgccctgcatgtttttcaaatatcaccctgcgt 5913980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 9039553 - 9039633
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 88  Q
    |||||||||| |||| | ||||||||||||||||| |||| |||||||  |||||||| | ||||||||||||| ||||||    
T  9039553 gaattttgcttttcatccagcacatttcgctcgcgtcctgaatgttttttaaatataatcgtgcgtgagttaagccacgca 9039633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 158
Target Start/End: Complemental strand, 15739755 - 15739705
Alignment:
Q  108 gttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct 158  Q
    ||||||||||||||||||| |||||||||||||| ||||| ||||||||||    
T  15739755 gttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttct 15739705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 23542943 - 23542901
Alignment:
Q  7 ggaattttgctcttcaccgagcacatttcgctcgcgccctgca 49  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  23542943 ggaattttgctcttcacccagcacatttcgctcgcgccctgca 23542901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 23810912 - 23810856
Alignment:
Q  100 ctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc 157  Q
    ||||| ||||||||||||||||||||||||||||| |||||| ||||| |||||||||    
T  23810912 ctgcgtgagttaacttgcgcaagttggacggtggt-aaaactgaagcacaaacgtttc 23810856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 35161503 - 35161571
Alignment:
Q  16 ctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtca 84  Q
    |||||||||  |||||||| ||||||||||||||  ||||  |||||||||| ||||||||||||||||    
T  35161503 ctcttcaccctgcacattttgctcgcgccctgcactttttttaaatataaccatgcgtgagttaagtca 35161571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 15743276 - 15743234
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagtta 111  Q
    ||||||| ||||||||||||||||||||||| |||||||||||    
T  15743276 tgcgtgacttaagtcacgcaccactgagcctatgcgcgagtta 15743234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 5015367 - 5015447
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgcac 89  Q
    |||||||||||||| ||  |||||||| |||||||| |||||  | ||||||||||| |||||||| |||||| | ||||||    
T  5015367 gaattttgctcttcgcct-gcacattttgctcgcgctctgcaactgttccaaatatacccttgcgttagttaactaacgcac 5015447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 43693764 - 43693723
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgca 49  Q
    |||||||||||||||||  |||||||| ||||||||||||||    
T  43693764 gaattttgctcttcaccctgcacattttgctcgcgccctgca 43693723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 37226988 - 37227028
Alignment:
Q  9 aattttgctcttcaccgagcacatttcgctcgcgccctgca 49  Q
    |||| ||||||||||| ||||||||| ||||||||||||||    
T  37226988 aattctgctcttcacccagcacattttgctcgcgccctgca 37227028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 7 - 173
Target Start/End: Original strand, 2447532 - 2447699
Alignment:
Q  7 ggaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgcaccactgagcctctgcgcg 106  Q
    |||||| |||||||||||  |||||||| ||||| ||||||||  |||| ||||| | ||| || ||||||||||||||||| |||| ||||| ||||||    
T  2447532 ggaattctgctcttcaccttgcacattttgctcgtgccctgcacttttttcaaatttgaccctgtgtgagttaagtcacgcaacactaagcctatgcgcg 2447631  T
Q  107 agttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtggtcaatg 173  Q
    |||||||| ||||||||||| | |||||||||||| ||||| ||||||||| |||||||| |||||||    
T  2447632 agttaactggcgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatg 2447699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 69 - 174
Target Start/End: Original strand, 49303208 - 49303314
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct-ggacggtgg 167  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||| |||||||      
T  49303208 tgcgtgacttaagtcacacaccactgagcctctgcgcgagttaactcgcgcaagttggccggtggtaaaaactgaagcacaaacgtttctaggacggtaa 49303307  T
Q  168 tcaatgc 174  Q
    |||||||    
T  49303308 tcaatgc 49303314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 49501619 - 49501514
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtgg 167  Q
    ||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |||||||| |    
T  49501619 tgcgtgacttaagtcacgcaccactgagcttatgcgtgagttaacttgcgcaagttggtcggtggtaaaaactgaagcacaaacgtttcttggacggtag 49501520  T
Q  168 tcaatg 173  Q
    ||||||    
T  49501519 tcaatg 49501514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 72 - 173
Target Start/End: Original strand, 41649949 - 41650051
Alignment:
Q  72 gtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtggtca 170  Q
    |||| ||||||||||||| ||||||||| |||||||||||| ||||||||||||| |||||||||||||| ||||| ||| ||||| |||||||| ||||    
T  41649949 gtgacttaagtcacgcactactgagcctatgcgcgagttaatttgcgcaagttggccggtggtaaaaactgaagcacaaatgtttcttggacggtagtca 41650048  T
Q  171 atg 173  Q
    |||    
T  41650049 atg 41650051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 69 - 158
Target Start/End: Complemental strand, 49742186 - 49742097
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct 158  Q
    ||||||| |||||||||||||||||||| || |||||||||||||||||||||||||  |||||||| ||||| ||||| ||||||||||    
T  49742186 tgcgtgacttaagtcacgcaccactgagtctatgcgcgagttaacttgcgcaagttgcccggtggtagaaactgaagcacaaacgtttct 49742097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 173
Target Start/End: Original strand, 23029646 - 23029752
Alignment:
Q  68 ttgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtg 166  Q
    |||||||| |||||||| |||||||||||||| |||| |||||||||||| | |||||| |||||||| ||||| || || ||||||||| ||||||||     
T  23029646 ttgcgtgacttaagtcatgcaccactgagcctatgcgggagttaacttgccctagttggccggtggtagaaactgaaacagaaacgtttcttggacggta 23029745  T
Q  167 gtcaatg 173  Q
    |||||||    
T  23029746 gtcaatg 23029752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 49501731 - 49501654
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcac 85  Q
    ||||| |||||||||||  | |||||| | ||||| ||||||| |||||||||||||||| |||||||||||||||||    
T  49501731 gaattctgctcttcaccctgtacattttgttcgcgtcctgcattttttccaaatataaccctgcgtgagttaagtcac 49501654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 37282923 - 37282843
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 88  Q
    ||||| ||||||||||| ||||||| || ||||||||||||| |  ||||||||||  |||||||  ||||||||||||||    
T  37282923 gaattctgctcttcacccagcacatatcactcgcgccctgcaagcattccaaatatgcccttgcgctagttaagtcacgca 37282843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 170
Target Start/End: Original strand, 25574829 - 25574927
Alignment:
Q  72 gtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacg-tttctggacggtggtca 170  Q
    |||| |||||||||||||||||| |||| ||||||||||||||  |||| ||||| ||||||| | |||| ||| | ||||| ||| |||||||||||||    
T  25574829 gtgacttaagtcacgcaccactg-gcctatgcgcgagttaactcacgcacgttggtcggtggtcagaactgaagaacaaacgttttttggacggtggtca 25574927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 47560577 - 47560497
Alignment:
Q  7 ggaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgc 87  Q
    ||||||||| ||||| |  ||||||||| |||||||||| ||||  ||||||| ||||  |||| ||||||||||||||||    
T  47560577 ggaattttgttcttctctcagcacattttgctcgcgcccagcataatttccaattatacacttgtgtgagttaagtcacgc 47560497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 170
Target Start/End: Original strand, 39415336 - 39415446
Alignment:
Q  61 tataacct-tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacg-tttct 158  Q
    |||||||| ||||||| |||||||||||||||||| |||| |||| |||||||||  |||| ||||| || |||| | |||| ||| | ||||| ||| |    
T  39415336 tataacctctgcgtgacttaagtcacgcaccactg-gcctgtgcgtgagttaactcacgcacgttggccgatggttagaactgaagaacaaacgtttttt 39415434  T
Q  159 ggacggtggtca 170  Q
    ||||||||||||    
T  39415435 ggacggtggtca 39415446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 48086833 - 48086906
Alignment:
Q  61 tataacct-tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggt 134  Q
    |||||||| ||| ||| |||||||||||||||||| |||| ||||||||||||||  |||| ||||| |||||||    
T  48086833 tataacctctgcatgacttaagtcacgcaccactg-gcctatgcgcgagttaactcacgcacgttggccggtggt 48086906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 69 - 174
Target Start/End: Complemental strand, 5290787 - 5290682
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttctggacggtggt 168  Q
    ||||||| ||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||| || || | ||||||||||||||||||    
T  5290787 tgcgtgacttaagtcacgcaccactgagcctatgcgtgagttaactcgcgcaagttggacggtggtaaaaactgaaacacagacgtttctggacggtggt 5290688  T
Q  169 caatgc 174  Q
    ||||||    
T  5290687 caatgc 5290682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 69 - 174
Target Start/End: Complemental strand, 4616725 - 4616619
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct-ggacggtgg 167  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||| |||||||| | |||||||||    
T  4616725 tgcgtgacttaagtcacgccccactgagcctctacgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttttgggacggtgg 4616626  T
Q  168 tcaatgc 174  Q
    |||||||    
T  4616625 tcaatgc 4616619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 69 - 174
Target Start/End: Complemental strand, 26257863 - 26257757
Alignment:
Q  69 tgcgtgagttaagtcacgca-ccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttctggacggtgg 167  Q
    ||||||| ||||||||| || ||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||| ||||||||||||| |||||    
T  26257863 tgcgtgacttaagtcacacatccactgagcctctgcgcaagttaacttgcgcaagttagacggtggtaaaaactgaagcacaaacgtttctggatggtgg 26257764  T
Q  168 tcaatgc 174  Q
    |||||||    
T  26257763 tcaatgc 26257757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 32737959 - 32737854
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtgg 167  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||| ||||| ||||||||| |||||||| |    
T  32737959 tgcgtgacttaagtcacgcaccactgagcctctgcgtgagttaacttgcgcaagttggccgatggtaaaaactgaagcacaaacgtttcttggacggtag 32737860  T
Q  168 tcaatg 173  Q
    ||||||    
T  32737859 tcaatg 32737854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 72 - 173
Target Start/End: Complemental strand, 41192467 - 41192365
Alignment:
Q  72 gtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtggtca 170  Q
    |||| ||||||||| ||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||| ||||    
T  41192467 gtgacttaagtcacacaccactgagcctatgtgcgagttaacttgcgcaagttggccggtggtaaaaactaaagcacaaacgtttcttggacggtagtca 41192368  T
Q  171 atg 173  Q
    |||    
T  41192367 atg 41192365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 77 - 173
Target Start/End: Complemental strand, 5814614 - 5814517
Alignment:
Q  77 ttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtggtcaatg 173  Q
    ||||||||||||| ||||||||| | |||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |||||||| |||||||    
T  5814614 ttaagtcacgcactactgagcctatacgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatg 5814517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 34619988 - 34619883
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtgg 167  Q
    ||||||| ||||||||||||| ||||||||| ||||||||||||||||| |||||||| ||||| |||||||| ||||| ||||||||| |||||||| |    
T  34619988 tgcgtgacttaagtcacgcactactgagcctatgcgcgagttaacttgcacaagttggccggtgataaaaactgaagcacaaacgtttcttggacggtag 34619889  T
Q  168 tcaatg 173  Q
    ||||||    
T  34619888 tcaatg 34619883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 4616836 - 4616758
Alignment:
Q  9 aattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgc 87  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||    
T  4616836 aattttgcttttcacccagcacatttcgctcgcgccctgcatgtttttcaaatataaccatgtgtgagttaagtcacgc 4616758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 86 - 173
Target Start/End: Original strand, 6728635 - 6728723
Alignment:
Q  86 gcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtggtcaatg 173  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| | ||||||| |||||||| |||||||    
T  6728635 gcaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacagacgtttcttggacggtagtcaatg 6728723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 34620083 - 34619999
Alignment:
Q  6 cggaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgcacc 90  Q
    ||||||| |||||||||||  |||||||| ||||||||||||||  |||||||||||||||| ||||||||||||||||||||||    
T  34620083 cggaattctgctcttcaccctgcacattttgctcgcgccctgcactttttccaaatataaccctgcgtgagttaagtcacgcacc 34619999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 1887918 - 1888023
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtgg 167  Q
    ||||||| ||||||||||| | ||||| | | |||||||||||||||||||||||||  |||||||||||||| ||||| ||||||||| |||||||| |    
T  1887918 tgcgtgacttaagtcacgcccaactgatcatatgcgcgagttaacttgcgcaagttgcccggtggtaaaaactgaagcacaaacgtttcttggacggtag 1888017  T
Q  168 tcaatg 173  Q
    ||||||    
T  1888018 tcaatg 1888023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 21083768 - 21083872
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtgg 167  Q
    ||||||| |||||||||  || ||||||||||||||| |||||||||||||||||||| ||||||| |||||| ||||| ||||||||| |||||||| |    
T  21083768 tgcgtgacttaagtcacttacaactgagcctctgcgcaagttaacttgcgcaagttggccggtggt-aaaactgaagcacaaacgtttcttggacggtag 21083866  T
Q  168 tcaatg 173  Q
    ||||||    
T  21083867 tcaatg 21083872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 2195246 - 2195149
Alignment:
Q  77 ttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttctggacggtggtcaatgc 174  Q
    ||||||| ||||||||||| | ||| | |||||||||| ||||||||| | || ||||||||||||||| | |||||||| |||||||||||||||||    
T  2195246 ttaagtctcgcaccactgatcatctacccgagttaactcgcgcaagttagccgatggtaaaaactaaagaacaaacgtttttggacggtggtcaatgc 2195149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 41192582 - 41192502
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 88  Q
    ||||| |||||||||||  |||||||| | ||||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  41192582 gaattctgctcttcaccctgcacattttgttcgcgccctgcactttttccaaatataaccctgcgtgagttaagtcacgca 41192502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 5290897 - 5290820
Alignment:
Q  9 aattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgc 87  Q
    |||||||||||||| | ||||||||||||||||||| |||||||||| | ||||||||| |||||| ||||||||||||    
T  5290897 aattttgctcttcatccagcacatttcgctcgcgccgtgcatgtttttcgaatataacc-tgcgtgggttaagtcacgc 5290820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 69 - 174
Target Start/End: Original strand, 37057199 - 37057305
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct-ggacggtgg 167  Q
    ||||||| ||||||||||||||||| || || | |||||||||||||  ||||||| |  ||||||||||||| ||||| |||||||| | |||||||||    
T  37057199 tgcgtgacttaagtcacgcaccactaagtctttacgcgagttaacttatgcaagttagttggtggtaaaaactgaagcacaaacgtttttgggacggtgg 37057298  T
Q  168 tcaatgc 174  Q
    |||||||    
T  37057299 tcaatgc 37057305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 6728507 - 6728586
Alignment:
Q  9 aattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 88  Q
    |||||||||||||||| | ||||||| ||| ||| ||||||| |||||||||||||||| ||| |||||||||| |||||    
T  6728507 aattttgctcttcacccatcacattttgcttgcgtcctgcattttttccaaatataaccctgcttgagttaagtaacgca 6728586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 32738071 - 32737994
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcac 85  Q
    ||||||||||||||||| ||  |||||||||||||||||||| |  ||||||||||  |||||||| |||||||||||    
T  32738071 gaattttgctcttcacccagttcatttcgctcgcgccctgcaagccttccaaatatgcccttgcgttagttaagtcac 32737994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 1887814 - 1887886
Alignment:
Q  16 ctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 88  Q
    ||||||||| | ||||||||||||| ||| ||||  |||| ||||||| | ||||||||||||||||||||||    
T  1887814 ctcttcacccaacacatttcgctcgagccttgcacatttttcaaatatgatcttgcgtgagttaagtcacgca 1887886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 29132834 - 29132754
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 88  Q
    ||||||||||||||||| ||||||||||||||||| ||||||    |||| |||||  || ||||| ||||||||||||||    
T  29132834 gaattttgctcttcacccagcacatttcgctcgcgtcctgcagccattcctaatatgcccctgcgttagttaagtcacgca 29132754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 26257939 - 26257886
Alignment:
Q  29 acatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagt 82  Q
    |||||||||||||| | ||||| |||||||||||||||| | ||||||||||||    
T  26257939 acatttcgctcgcgtcttgcatattttccaaatataaccatacgtgagttaagt 26257886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 5814703 - 5814655
Alignment:
Q  40 gcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 88  Q
    ||||||||||  |||| ||||||||||| ||||||||||||||||||||    
T  5814703 gcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgca 5814655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 37891765 - 37891809
Alignment:
Q  70 gcgtgagttaagtcacgcaccactgagcctctgcgcgagttaact 114  Q
    |||||| |||||||||||||||||||||||  |||||||||||||    
T  37891765 gcgtgacttaagtcacgcaccactgagccttagcgcgagttaact 37891809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 170
Target Start/End: Original strand, 29908493 - 29908603
Alignment:
Q  61 tataacct-tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacg-tttct 158  Q
    |||||||| ||||||| ||||||||||| |||||| |||| ||||||||||||||   ||| ||||| ||||||| | |||| ||| | ||||| ||| |    
T  29908493 tataacctctgcgtgacttaagtcacgcgccactg-gcctatgcgcgagttaactcatgcacgttggccggtggttagaactgaagaacaaacgtttttt 29908591  T
Q  159 ggacggtggtca 170  Q
    ||||||||||||    
T  29908592 ggacggtggtca 29908603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 12874244 - 12874308
Alignment:
Q  71 cgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaa 136  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||||  ||||| |||  |||||||||    
T  12874244 cgtgacttaagtcacgcaccactga-cctatgcgcgagttaactcacgcaacttgagcggtggtaa 12874308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 19380332 - 19380291
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgca 49  Q
    |||||||||||| |||| ||||||||| ||||||||||||||    
T  19380332 gaattttgctctccacccagcacattttgctcgcgccctgca 19380291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 21083679 - 21083736
Alignment:
Q  31 atttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 88  Q
    |||| ||| ||||||| ||  |||| ||||||||||| ||||||||||||||||||||    
T  21083679 attttgcttgcgccctacacatttttcaaatataaccctgcgtgagttaagtcacgca 21083736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 28030431 - 28030467
Alignment:
Q  13 ttgctcttcaccgagcacatttcgctcgcgccctgca 49  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  28030431 ttgctcttcacccagcacttttcgctcgcgccctgca 28030467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 68 - 173
Target Start/End: Original strand, 20092 - 20198
Alignment:
Q  68 ttgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtg 166  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| | ||||| ||||||||| ||||||||     
T  20092 ttgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaattgaagcacaaacgtttcttggacggta 20191  T
Q  167 gtcaatg 173  Q
    |||||||    
T  20192 gtcaatg 20198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 20001 - 20082
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgcacc 90  Q
    ||||| |||||||||||  |||||||| ||||  ||||||||  ||||| |||||||| | |||||||||||| |||||||||    
T  20001 gaattctgctcttcaccctgcacattt-gctcatgccctgcaccttttcaaaatataaacctgcgtgagttaactcacgcacc 20082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 69 - 174
Target Start/End: Original strand, 39283989 - 39284095
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct-ggacggtgg 167  Q
    ||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||| ||||| |||||||| | |||||||||    
T  39283989 tgcgtgacttaagtcacgcaccactgagcctctacgcgagttaatttgcgcaagttggtcggtggtaaaaactgaagcacaaacgtttttgggacggtgg 39284088  T
Q  168 tcaatgc 174  Q
    |||||||    
T  39284089 tcaatgc 39284095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 14678225 - 14678409
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataacct------------------tgcgtgagttaagtcacgcac 89  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||| ||                  | ||||| |||||||||||||    
T  14678225 gaattttgctcttcacccatcacatttcgctcgcgccctgcatgtttttcaaatataaactcacgcacctcacaacctctacgtgacttaagtcacgcac 14678324  T
Q  90 cactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtggtcaatg 173  Q
    ||||||||||||| | ||||||||||||||||||||| ||||||||||||||  |||| ||||||||| ||||||||||||||||    
T  14678325 cactgagcctctgtgtgagttaacttgcgcaagttggccggtggtaaaaactgcagcacaaacgtttcttggacggtggtcaatg 14678409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 69 - 158
Target Start/End: Complemental strand, 4035239 - 4035150
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct 158  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||| ||||||    
T  4035239 tgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaatgtttct 4035150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 39283876 - 39283957
Alignment:
Q  7 ggaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 88  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  39283876 ggaattttgctcttcacccagcacatttcgcttgcgccctgcatgttttcaaaatataaccatgcgtgagttaagtcacgca 39283957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 68 - 173
Target Start/End: Original strand, 37450001 - 37450107
Alignment:
Q  68 ttgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtg 166  Q
    |||||||| ||||||| |||| |||||||||| ||| |||||||||||||||||||||  |||||||||||||| ||||| ||||||||| ||||||||     
T  37450001 ttgcgtgacttaagtcgcgcatcactgagcctatgcacgagttaacttgcgcaagttgaccggtggtaaaaactgaagcacaaacgtttcttggacggta 37450100  T
Q  167 gtcaatg 173  Q
    |||||||    
T  37450101 gtcaatg 37450107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 3742439 - 3742352
Alignment:
Q  87 caccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtggtcaatg 173  Q
    ||||||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |||||||| |||||||    
T  3742439 caccactgagcctatgcgtgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatg 3742352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 40144869 - 40144784
Alignment:
Q  70 gcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtt 155  Q
    |||||| |||||||||||||||||||| || || |||| ||||| |||||||||||| |||||||||||||| ||||| |||||||    
T  40144869 gcgtgacttaagtcacgcaccactgagtctatgtgcgacttaacctgcgcaagttggccggtggtaaaaactgaagcacaaacgtt 40144784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 8260879 - 8260944
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggt 134  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||  |||||||||| |||||||    
T  8260879 tgcgtgacttaagtcacgcaccactgagcctttgcgcgagttaactcacgcaagttggccggtggt 8260944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 4035351 - 4035271
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 88  Q
    ||||| |||||||||||  |||||||| ||||||||||| ||  |||| ||||||||||| ||||||||||||||||||||    
T  4035351 gaattctgctcttcaccctgcacattttgctcgcgccctacacttttttcaaatataaccctgcgtgagttaagtcacgca 4035271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 30362812 - 30362750
Alignment:
Q  70 gcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtg 132  Q
    |||||| |||||||||||||||||||||||  ||||||||||||| |||| |||||| |||||    
T  30362812 gcgtgacttaagtcacgcaccactgagccttagcgcgagttaactcgcgctagttggtcggtg 30362750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 27874122 - 27874048
Alignment:
Q  60 atataacct-tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggt 134  Q
    ||||||||| ||||||| ||||| ||||||||||||| ||| ||||||||||||||  |||| ||||| |||||||    
T  27874122 atataacctctgcgtgacttaagccacgcaccactga-cctatgcgcgagttaactcacgcacgttggccggtggt 27874048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 14679321 - 14679280
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgca 49  Q
    ||||||| ||||||||| |||||||||||||||| |||||||    
T  14679321 gaatttttctcttcacccagcacatttcgctcgcaccctgca 14679280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 34354555 - 34354515
Alignment:
Q  9 aattttgctcttcaccgagcacatttcgctcgcgccctgca 49  Q
    ||||||||||||| || ||||||||||||||||||| ||||    
T  34354555 aattttgctcttcccccagcacatttcgctcgcgccttgca 34354515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 156
Target Start/End: Complemental strand, 41219471 - 41219376
Alignment:
Q  61 tataacct-tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgttt 156  Q
    |||||||| ||||||| |||||||||||| ||||| |||| ||||||||||||||  |||| |||||  |||||| | |||| ||| | ||||||||    
T  41219471 tataacctctgcgtgacttaagtcacgcatcactg-gcctatgcgcgagttaactcacgcacgttggctggtggtcagaactgaagaacaaacgttt 41219376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 68 - 172
Target Start/End: Complemental strand, 3515306 - 3515201
Alignment:
Q  68 ttgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct-ggacggtg 166  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||  |||| |||||||| | ||||||||    
T  3515306 ttgcgtgacttaagtcacgcaccactgagcctctacgcgagttaacttgcgcaagttggccggtggtaaaaactgtagcacaaacgtttttcggacggtg 3515207  T
Q  167 gtcaat 172  Q
    ||||||    
T  3515206 gtcaat 3515201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 11599019 - 11599124
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtgg 167  Q
    ||||||| |||||||| ||||||| |||||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |||||||| |    
T  11599019 tgcgtgacttaagtcatgcaccaccgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttcttggacggtag 11599118  T
Q  168 tcaatg 173  Q
    ||||||    
T  11599119 tcaatg 11599124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 174
Target Start/End: Complemental strand, 30634200 - 30634096
Alignment:
Q  71 cgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct-ggacggtggtc 169  Q
    ||||| ||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||| ||||| |||||||| | ||||||||| |    
T  30634200 cgtgacttaagtcacgcaccactgagcctctacgtgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttttgggacggtggcc 30634101  T
Q  170 aatgc 174  Q
    |||||    
T  30634100 aatgc 30634096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 30634314 - 30634234
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 88  Q
    ||||||||||||||||| |  |||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  30634314 gaattttgctcttcacccaatacatttcgctcgcgccctgcacattttccaaatataaccctgcgtgagttaagtcacgca 30634234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 11598907 - 11598984
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcac 85  Q
    |||||||||||||||||  |||||||| ||||||||||||||  |||||||||||||||| |||||||||||| ||||    
T  11598907 gaattttgctcttcaccctgcacattttgctcgcgccctgcactttttccaaatataaccctgcgtgagttaactcac 11598984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 3515419 - 3515359
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcg-ccctgcatgttttccaaatataacc 67  Q
    |||||| |||||||||| |||| |||||||||||| |||||||||||||||||||||||||    
T  3515419 gaatttagctcttcaccaagcaaatttcgctcgcgtccctgcatgttttccaaatataacc 3515359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 134
Target Start/End: Original strand, 17398993 - 17399097
Alignment:
Q  29 acatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggac 128  Q
    |||||| |||||||||| ||||  |||| || |||| |||| | |||||||||||||||||||||| || | || |||||||||||  |||||||||| |    
T  17398993 acattttgctcgcgcccagcataatttctaattatacccttacatgagttaagtcacgcaccactg-gcatgtgtgcgagttaactcacgcaagttggcc 17399091  T
Q  129 ggtggt 134  Q
    ||||||    
T  17399092 ggtggt 17399097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 11600056 - 11600015
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgca 49  Q
    ||||||||||||||||| |||||||||||||||| |||||||    
T  11600056 gaattttgctcttcacccagcacatttcgctcgcaccctgca 11600015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 69 - 156
Target Start/End: Original strand, 3998 - 4085
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgttt 156  Q
    ||||||| ||||||||||||||||||||||| | ||||||||||||  |||||||||  ||||||| | |||| ||| | ||||||||    
T  3998 tgcgtgacttaagtcacgcaccactgagcctttccgcgagttaactcacgcaagttgaccggtggtcagaactgaagaacaaacgttt 4085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0861 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0861
Description:

Target: scaffold0861; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 3924 - 3848
Alignment:
Q  8 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtca 84  Q
    |||||||||||| |||| |||| |||||||||| |||||||| |  ||||||||||  |||||| | ||||||||||    
T  3924 gaattttgctctacacccagcatatttcgctcgtgccctgcaagcattccaaatatgcccttgcattagttaagtca 3848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 156
Target Start/End: Original strand, 25598 - 25685
Alignment:
Q  69 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgttt 156  Q
    ||||||| ||||| |||| |||||  ||||| ||||||||||||||  |||||||||| ||||||| | |||| ||| | ||||||||    
T  25598 tgcgtgacttaaggcacgtaccacccagcctttgcgcgagttaactcacgcaagttggccggtggtcagaactgaagaacaaacgttt 25685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University