View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19013_high_3 (Length: 592)
Name: NF19013_high_3
Description: NF19013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19013_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 15 - 575
Target Start/End: Complemental strand, 43910908 - 43910340
Alignment:
| Q |
15 |
cttaatacaaagtgaaaatagcaaagaataacttttttatttgaaacggcggatgttagtat-gttagtttttatactggatctggagattgaacccacg |
113 |
Q |
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| T |
43910908 |
cttaataataagtgaaaatagcaaagaataacttttttatttgaaacggcgaatgttagtattgttagtttttatactggatctggagattgaacccacg |
43910809 |
T |
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| Q |
114 |
acttcttatgacaccgctagcataaagaaca----ataagaggacaagaaagtatttcatattccatagtaccttgtgtttgtaacctgaattatgttgc |
209 |
Q |
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| T |
43910808 |
acttcttatgacaccgctagcataaagaacatacaataag-ggacaggaaagtatttcatattccatagtaccttgtgtttgtaacctgaattatgttgc |
43910710 |
T |
|
| Q |
210 |
tttcttacagatggctgcaagaaacagaaacaaagaaaacaaagtaaaattatgtaattgtgaccaacaaccttttcatggaattaaaacaaaaacttaa |
309 |
Q |
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| T |
43910709 |
tttcttacagatggctgcaaga------aacaaagaaaacaaagtaaaattatgtaattgtgaccaacaaccttttcatggaattaaaacaaaaacttaa |
43910616 |
T |
|
| Q |
310 |
ttttccatcaaaaaatttataaccctaaacttacagaatcgtgggtcaagtaggtatcgcagtagtcacagtaatagctgcaaattggaagg-------- |
401 |
Q |
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| T |
43910615 |
ttttccatcaaaaaatttataaccctaaacttacagaatcgtgggtcaagtaggtatcgcagtagtcacagtaatagctgcaaattggaaggaaaaaaaa |
43910516 |
T |
|
| Q |
402 |
--nnnnnnnnnngtgagtgattaaggagtaataacatgaattgaattaagatgaaatttgaataaagaagtaccgaggcatcgcggtttgaattgtaatg |
499 |
Q |
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| T |
43910515 |
aagaaaaaaaaagtgagtgattaaggagtaataacatgaattgaattaagatgaaatttgaataaagaagtaccgaggcatcgcggtttgaattgtaatg |
43910416 |
T |
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| Q |
500 |
gctccttctccttcgagagctgaaccgatcagtggatgatgaattcgaagaagaaacagaacagagatgagagaac |
575 |
Q |
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| T |
43910415 |
gctccttctccttcgagagctgaaccgatcagtggatgatgaattcgaagaagaaacagaacagagatgagagaac |
43910340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 392
Target Start/End: Original strand, 39976583 - 39976638
Alignment:
| Q |
337 |
aacttacagaatcgtgggtcaagtaggtatcgcagtagtcacagtaatagctgcaa |
392 |
Q |
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| T |
39976583 |
aacttacagaatcgtgggtgagataggtatcgcagaagtcacagtagtacctgcaa |
39976638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 39976003 - 39976052
Alignment:
| Q |
180 |
accttgtgtttgtaacctgaattatgttgctttcttacagatggctgcaa |
229 |
Q |
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| T |
39976003 |
accttgtgtttataaccagagttatgctgctttctaacagatggctgcaa |
39976052 |
T |
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