View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19013_high_4 (Length: 563)
Name: NF19013_high_4
Description: NF19013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19013_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 4 - 544
Target Start/End: Original strand, 8428460 - 8429000
Alignment:
| Q |
4 |
gatttatttatctatagatgtgattaactctaacctccaaaactattcaaaataactctaatctctaagtccacatgaagcttgacagaacctaaagccc |
103 |
Q |
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| T |
8428460 |
gatttatttatctatagatgtgattaactctaacctccaaaactattcaaaataactctaatctctaagtccacatgaagcttgacagaacctaaagccc |
8428559 |
T |
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| Q |
104 |
ttccctcaaccaaaagcaataacatatgcacttcctaacaaaggacaggaaatgaaatcaaactgataaatcttaagatgaaataatagnnnnnnnccag |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
8428560 |
ttccctcaaccaaaagcaataacatatgcacttcctaacaaaggacaggaaatgaaatcaaactgataaatcttaagatgaaataatggaaaaaaaccag |
8428659 |
T |
|
| Q |
204 |
cgatacaccaaataacaagtaacaagatcaaatcattctgttatagttttggaatggggattttatcgttttaatacatagcgatacacattgattgagt |
303 |
Q |
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| T |
8428660 |
cgatacaccaaataacaagtaacaagatcaaatcattctgttatagttttggaatggggattttatcgttttaatacatagcgatacacattgattgagt |
8428759 |
T |
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| Q |
304 |
caggtcagtgaccttgcatatcaagcatttcatcgagtcgtttcaatttttccaagccttcactgatcaagaaacggatcctttgtttgtcattgcagtt |
403 |
Q |
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| T |
8428760 |
caggtcagtgaccttgcatatcaagcatttcatcgagtcgtttcaatttttccaagccttcactgatcaagaaacggatcctttgtttgtcattgcagtt |
8428859 |
T |
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| Q |
404 |
tcgattaatttcaatctcttgtctaatagtttgtctcagttcacctgcacatctcaagcattgtcatgtcatgaatcatcatcatgattgggattacact |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8428860 |
tcgattaatttcaatctcttgtctaatagtttgtctcagttcacctgcacatctcaagcattgtcatgtcatgaatcatcatcatgattgggattacact |
8428959 |
T |
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| Q |
504 |
tacaaaatgagaaagtttacctctagcgggagggggagctc |
544 |
Q |
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| T |
8428960 |
tacaaaatgagaaagtttacctctagcgggagggggagctc |
8429000 |
T |
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