View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19013_high_5 (Length: 501)
Name: NF19013_high_5
Description: NF19013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19013_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 26187334 - 26187101
Alignment:
| Q |
18 |
tcaagagctttttgcctatgaaaacatgtgctcccctactaatataatctctagagctattctagctcagatgtgataaattgtgtgactcattttaaga |
117 |
Q |
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| T |
26187334 |
tcaagagctttttgcctatgaaaacatgtgctcccctactaatataatctctagagctattccagctcagatgtgataaattgtgtgactcattttaaga |
26187235 |
T |
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| Q |
118 |
ctaaactgcttgcaagataatttcgtagatgctaaaagtctgannnnnnnatgggtaagaaaaatataatttgataagtttatatgaattgaaaatatat |
217 |
Q |
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| T |
26187234 |
ctaaactgcttgcaagataatttcgtagatactaaaagtctgatttttttatgggtaagaaaaatataatttgataagtttatatgaattgaaaatatat |
26187135 |
T |
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| Q |
218 |
ttaattattggatcatgctatgacaattgttaaa |
251 |
Q |
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| T |
26187134 |
ttaattattggatcatgctatgacaattgttaaa |
26187101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 335 - 471
Target Start/End: Complemental strand, 26187011 - 26186874
Alignment:
| Q |
335 |
cactttttcaactttggaaattgtttcctcaaaaataaaactttagaaattcnnnnnnnagaagttggaaaagagttcatttggatgcaaaa-tttatat |
433 |
Q |
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| T |
26187011 |
cactttttcaactttggaaattgtttcctcaaaaataaacctttagaaattctttttttagaagttggaaaagagttcatttggatgcaaaattttatat |
26186912 |
T |
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| Q |
434 |
actcttttgttcatatatatataagtaccctttgcttt |
471 |
Q |
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| T |
26186911 |
actcttttgttcatatatatataagtaccctttgcttt |
26186874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 335 - 437
Target Start/End: Complemental strand, 26170480 - 26170378
Alignment:
| Q |
335 |
cactttttcaactttggaaattgtttcctcaaaaataaaactttagaaattcnnnnnnnagaagttggaaaagagttcatttggatgcaaaatttatata |
434 |
Q |
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| T |
26170480 |
cactttttcaactttgaaaattgtttcctctaaaataaaactttagaaattcttaatttagaagttggaaaagagttattttggatgcaaaatatatata |
26170381 |
T |
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| Q |
435 |
ctc |
437 |
Q |
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||| |
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| T |
26170380 |
ctc |
26170378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 188 - 223
Target Start/End: Complemental strand, 26170622 - 26170587
Alignment:
| Q |
188 |
ttgataagtttatatgaattgaaaatatatttaatt |
223 |
Q |
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| T |
26170622 |
ttgataagtttatatgaattgaaaatatatttaatt |
26170587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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