View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19013_high_7 (Length: 423)
Name: NF19013_high_7
Description: NF19013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19013_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 35409095 - 35408877
Alignment:
| Q |
19 |
aattctgcgtagatagttcggttagtgaactaagggtcgttgaaggagtttaaaggaggaggttccgagtttcatctccaaaaactaacataactattaa |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35409095 |
aattctgcatagatagttcggttagtgaactaagggtcgttgaaggagtttaaaggaggaggttccgagtttcatctccagaaactaacataactattaa |
35408996 |
T |
|
| Q |
119 |
cattgctaacaatttccaatacaaaaaatagctgaaacttttatcatgatcttactatgcccttttctctatttaaaccccctcatcaaaaaagataatc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35408995 |
cattgctaacaatttccaatacaaaaaatagctgaaacttttatcatgatcttactatgcccttttctctatttaaaccccctcatcaaaaaagataatc |
35408896 |
T |
|
| Q |
219 |
aaagtatcatttggtctaa |
237 |
Q |
| |
|
||||||| |||||| |||| |
|
|
| T |
35408895 |
aaagtatgatttgggctaa |
35408877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 226 - 416
Target Start/End: Complemental strand, 35408856 - 35408646
Alignment:
| Q |
226 |
catttggtctaatactttttgtgggcctaattttttagtcaaataagtaagactgttacttat--------------------ttgaaactagcagttta |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| | || ||||||||| |||| |
|
|
| T |
35408856 |
catttggtctaatactttttgtgggcctaattttttagtcaaataaataagactattacttttctcactctaataaactacttttaaaactagcaattta |
35408757 |
T |
|
| Q |
306 |
aatatagagacacgcgtgcaggagagaagaaatcctgaccgtccaatacgtgaataatctgggtctgttgtcaccataaagctccggactgacctgacta |
405 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35408756 |
aatatagagacacgcgtgcagaagagaagaaatcctgaccgtccaatacgtgaataatctgggtctgttgtcaccataaagctccggactgacctgacta |
35408657 |
T |
|
| Q |
406 |
gtagaataatc |
416 |
Q |
| |
|
|||||||||| |
|
|
| T |
35408656 |
atagaataatc |
35408646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 334 - 407
Target Start/End: Original strand, 48018462 - 48018535
Alignment:
| Q |
334 |
gaaatcctgaccgtccaatacgtgaataatctgggtctgttgtcaccataaagctccggactgacctgactagt |
407 |
Q |
| |
|
||||| || |||||||| || || ||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
48018462 |
gaaatgctaaccgtccagtaagtaaataatctgggtctgctgtcaccataaagctccggactgacctaactagt |
48018535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 11330646 - 11330593
Alignment:
| Q |
36 |
tcggttagtgaactaagggtcgttgaaggagtttaaaggaggaggttccgagtt |
89 |
Q |
| |
|
|||||| |||| ||||||| ||||||||||| || ||| ||||||||||||||| |
|
|
| T |
11330646 |
tcggttggtgagctaagggacgttgaaggagatttaagaaggaggttccgagtt |
11330593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University