View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19013_high_8 (Length: 385)
Name: NF19013_high_8
Description: NF19013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19013_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 49 - 383
Target Start/End: Original strand, 33262054 - 33262388
Alignment:
| Q |
49 |
ttgcaaccacagagtgccatgttggaagggccagcaattagtcatctgcaaccacaaactgccatattggaggggtcaacaatgactagtttgcaaccgc |
148 |
Q |
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| T |
33262054 |
ttgctaccacagactgccatgttggaagggccatcaattagtaatctgcaaccacgaactgccatattggaggggtcaacaatgactagtttgcaaccgc |
33262153 |
T |
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| Q |
149 |
agaatgccacattgcaagggccagcaagtctgcctttcaacatcccaacttcagaagagctgagctcaatgattttgggtcattcagtcaatggacccat |
248 |
Q |
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| T |
33262154 |
agaatgccacactgcaagggccaacaagtctgcctttcaacatcccaatttcagaagagctgagctcaatgattttgggtcattcagtaaatggacccat |
33262253 |
T |
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| Q |
249 |
tgatggagctagttcaagaccccctggcgccactgagaatgagattgtacagattttaaggtatcaattttttcattttatagaggnnnnnnnnctagtt |
348 |
Q |
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| T |
33262254 |
tgatggagctagttcaagaccccctagcgccactgagaatgagattgtacagattttaaggtatcaattttttcattttatagaggttttttttctaggt |
33262353 |
T |
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| Q |
349 |
tatctttgaagaattacgagtaatttacctataaa |
383 |
Q |
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| T |
33262354 |
tatctttgaagaattacgagtaatttacctataaa |
33262388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 33261971 - 33262025
Alignment:
| Q |
11 |
cacagagagcgatattgcaagggccagcgatgactgagttgcaaccacagagtgc |
65 |
Q |
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| T |
33261971 |
cacagagagcgatattgcaagggccagcgatgactgagttggaaccacagagtgc |
33262025 |
T |
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