View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19013_low_1 (Length: 703)
Name: NF19013_low_1
Description: NF19013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19013_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 292 - 687
Target Start/End: Original strand, 5023251 - 5023642
Alignment:
| Q |
292 |
ttactcttaaggtctgtttggagtttagaaggggaggacttcagaaaaaatgaagtggaatgaatggatgctttctttagttgggaagggatttgagaga |
391 |
Q |
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| T |
5023251 |
ttactctgaaggtctgtttggagtttagaaggggaggacttcagaaaaaatgaagtggaatgaatgaatgctttctttagttgggaagggatttcagaga |
5023350 |
T |
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| Q |
392 |
ctcattcattattctttataaagcataatctcccaaatttgagttagaacattcatcaagatcggaaaattattaaaatgaaatttatgannnnnnnaag |
491 |
Q |
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| T |
5023351 |
ctcatt----attctttataaagcataatctcccaaatttgagttagaacattcatcaagatcggaaaattattaaaatgaaatttatgaatttttttag |
5023446 |
T |
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| Q |
492 |
ctttgaatatcatgagactattgtaaaaatataaggataaaaatataaattagttataaaattccttcccttgcgaacctatcacatgtgtaattaaagt |
591 |
Q |
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| T |
5023447 |
ctttgaatatcattagactattgtaaaaatataaggataaaaatataaattagttataaaattccttcccttgcgaacctatcacatatgtaattaaagt |
5023546 |
T |
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| Q |
592 |
ttttctcctccattctaccaaaaaataaaattatcctccactcttttaaccaaacttatatataattaaaatttctccccttacattgttaaaatc |
687 |
Q |
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| T |
5023547 |
ttttctcctccattctaccaaaaaataaaattatcctccactcttttaaccaaacttatatataattaaaatttctccccttacattgttaaaatc |
5023642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 45 - 265
Target Start/End: Original strand, 5023036 - 5023257
Alignment:
| Q |
45 |
ataggacagtagacttccatctccatcagccaacatatatatattgaaactattacaatattcattatagacnnnnnnnn-gtgttttagtttcatgtag |
143 |
Q |
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| T |
5023036 |
ataggacagtagacttccatctccatcagccaacatatatatattgaaactattacaatattcattatagactttttttttgtgttttaggttcatgtag |
5023135 |
T |
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| Q |
144 |
gttgtgaaatgaacataatctaattctattgcaatgttgtttgaacagtatcaagggctatggtcctacaatgatactttctttccacactcttgtgctt |
243 |
Q |
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| T |
5023136 |
gttgtgaaatgaacataatctaatgctattgcaatgttgtttgaacagtagaaagggctatggtcctacaatgatactttctttccacactcttgtgctt |
5023235 |
T |
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| Q |
244 |
aacgttgattgaattttactct |
265 |
Q |
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| T |
5023236 |
aacgttgattgaattttactct |
5023257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 5022592 - 5022639
Alignment:
| Q |
1 |
ttcttagattagaaaaccaattaaaggaaaatgtaacttgaaacatag |
48 |
Q |
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| T |
5022592 |
ttcttagattagaaaaccaattaaaggaaaatgtaacttgaaacatag |
5022639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 551
Target Start/End: Complemental strand, 49292018 - 49291970
Alignment:
| Q |
502 |
catgagactattgtaaaaatataaggataaaaatataaattagttataaa |
551 |
Q |
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| T |
49292018 |
catgagac-attgtcaaattataaggataaaaatataaataagttataaa |
49291970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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