View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19013_low_10 (Length: 372)

Name: NF19013_low_10
Description: NF19013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19013_low_10
NF19013_low_10
[»] chr7 (4 HSPs)
chr7 (181-356)||(7847366-7847542)
chr7 (181-344)||(11073861-11074022)
chr7 (181-328)||(37623593-37623740)
chr7 (181-320)||(37623070-37623209)
[»] chr3 (6 HSPs)
chr3 (181-323)||(32000190-32000332)
chr3 (181-323)||(54410258-54410400)
chr3 (181-328)||(55136042-55136189)
chr3 (181-323)||(55135562-55135704)
chr3 (181-327)||(32000672-32000818)
chr3 (181-328)||(54409773-54409920)
[»] chr8 (5 HSPs)
chr8 (181-323)||(39069851-39069993)
chr8 (181-266)||(39069338-39069422)
chr8 (181-244)||(10215103-10215166)
chr8 (265-313)||(10214950-10214998)
chr8 (256-328)||(39069439-39069510)
[»] chr4 (2 HSPs)
chr4 (181-327)||(47650258-47650404)
chr4 (181-309)||(47649780-47649908)
[»] chr2 (12 HSPs)
chr2 (181-323)||(21153506-21153648)
chr2 (181-323)||(519316-519455)
chr2 (181-328)||(27478550-27478697)
chr2 (181-328)||(518833-518980)
chr2 (181-328)||(10455236-10455383)
chr2 (181-328)||(24460212-24460358)
chr2 (181-323)||(24459777-24459918)
chr2 (181-323)||(27478070-27478211)
chr2 (181-292)||(21153026-21153137)
chr2 (181-292)||(20919472-20919580)
chr2 (181-309)||(10454760-10454891)
chr2 (181-278)||(20604941-20605039)
[»] chr5 (2 HSPs)
chr5 (181-323)||(6720434-6720574)
chr5 (181-324)||(6719952-6720095)


Alignment Details
Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 181 - 356
Target Start/End: Original strand, 7847366 - 7847542
Alignment:
Q  181 aaaaattgtccatccaaatataccttcaaattccttaaattttttcacttccattttcttctaaacac-aaaattcaaaattctcaaatttcataaaccc 279  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7847366 aaaaattgtccatccaaatataccttcaaattccttaaaaattttcacttccattttcttctaaacaccaaaattcaaaattctcaaatttcataaaccc 7847465  T
Q  280 taagtttaccaaatccaaaaatttggattttggatttaaagaaagaaactcagtattaattatgcgcgcgtgtgtgt 356  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||| ||||||||    
T  7847466 taagtttaccaaatccaaaaatttggattttggatttaaataaagaaacccagtattaattatgtgcgtgtgtgtgt 7847542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 181 - 344
Target Start/End: Original strand, 11073861 - 11074022
Alignment:
Q  181 aaaaattgtccatccaaatataccttcaaattccttaaattttttcacttccattttcttctaaacacaaaattcaaaattctcaaatttcataaaccct 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  11073861 aaaaattgtccatccaaatataccttcaaattccttaaattttttcacttccattttcttctaaacacat--ttcaaaattctcaaatttcataaaccct 11073958  T
Q  281 aagtttaccaaatccaaaaatttggattttggatttaaagaaagaaactcagtattaattatgc 344  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  11073959 aagtttaccaaatccaaaaatttggattttggatttaatgaaagaaacccagtattaattatgc 11074022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 181 - 328
Target Start/End: Complemental strand, 37623740 - 37623593
Alignment:
Q  181 aaaaattgtccatccaaatataccttcaaattccttaaattttttcacttccattttcttctaaacacaaaattcaaaattctcaaatttcataaaccct 280  Q
    ||||||||||||||||||||||| |||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||    
T  37623740 aaaaattgtccatccaaatatacattcaaattccttaaatatttccacttccatcttcttctaaacacaaaattcaaaatactcaaattttataaaccct 37623641  T
Q  281 aagtttaccaaatccaaaaatttggattttggatttaaagaaagaaac 328  Q
    |||||| ||||| ||| |||| || |||||||||||||||||||||||    
T  37623640 aagtttgccaaacccataaatatgaattttggatttaaagaaagaaac 37623593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 181 - 320
Target Start/End: Original strand, 37623070 - 37623209
Alignment:
Q  181 aaaaattgtccatccaaatataccttcaaattccttaaattttttcacttccattttcttctaaacacaaaattcaaaattctcaaatttcataaaccct 280  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||| | |||||||||||||||||    
T  37623070 aaaaattgtccatccaaataaaccttcaaattccttaaatattttcgcttccatcttcttctaaacacaaaattcaaaatccccaaatttcataaaccct 37623169  T
Q  281 aagtttaccaaatccaaaaatttggattttggatttaaag 320  Q
    || ||||||||| | | |||||| ||||||||||||||||    
T  37623170 aattttaccaaaccgataaatttagattttggatttaaag 37623209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 181 - 323
Target Start/End: Original strand, 32000190 - 32000332
Alignment:
Q  181 aaaaattgtccatccaaatataccttcaaattccttaaattttttcacttccattttcttctaaacacaaaattcaaaattctcaaatttcataaaccct 280  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||    
T  32000190 aaaaattgtccatccaaataaaccttcaaattccttaaatattttcacttccatcttcttctaaacacaaaattcaaaatccccaaatttcataaaccct 32000289  T
Q  281 aagtttaccaaatccaaaaatttggattttggatttaaagaaa 323  Q
    || ||||||||| ||| |||||| |||||||||||||||||||    
T  32000290 aattttaccaaacccataaatttcgattttggatttaaagaaa 32000332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 181 - 323
Target Start/End: Complemental strand, 54410400 - 54410258
Alignment:
Q  181 aaaaattgtccatccaaatataccttcaaattccttaaattttttcacttccattttcttctaaacacaaaattcaaaattctcaaatttcataaaccct 280  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||    
T  54410400 aaaaattgtccatccaaataaaccttcaaattccttaaatattttcacttccattttcttctaaacacaaaattcaaagtccccaaatttcataaaccct 54410301  T
Q  281 aagtttaccaaatccaaaaatttggattttggatttaaagaaa 323  Q
    || ||||| ||| | | |||||| |||||||||||||||||||    
T  54410300 aattttacaaaagcaataaatttagattttggatttaaagaaa 54410258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 181 - 328
Target Start/End: Complemental strand, 55136189 - 55136042
Alignment:
Q  181 aaaaattgtccatccaaatataccttcaaattccttaaattttttcacttccattttcttctaaacacaaaattcaaaattctcaaatttcataaaccct 280  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||    
T  55136189 aaaaattgtccatccaaataaaccttcaaattccttaaatattttcacttccatcttcttctaaacacaaaattcaaaatactcaaattttataaaccct 55136090  T
Q  281 aagtttaccaaatccaaaaatttggattttggatttaaagaaagaaac 328  Q
    | |||| | ||| ||| |||| || |||||| ||||||||||||||||    
T  55136089 aggtttgcaaaacccataaatctgaattttgaatttaaagaaagaaac 55136042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 181 - 323
Target Start/End: Original strand, 55135562 - 55135704
Alignment:
Q  181 aaaaattgtccatccaaatataccttcaaattccttaaattttttcacttccattttcttctaaacacaaaattcaaaattctcaaatttcataaaccct 280  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| | | |||| ||||||||||||    
T  55135562 aaaaattgtccatccaaataaaccttcaaattccttaaatattttcacttccatcttcttctaaacacaaaattcaaagtccccaaaattcataaaccct 55135661  T
Q  281 aagtttaccaaatccaaaaatttggattttggatttaaagaaa 323  Q
    || ||||||||| | | |||||| |||||||||||||||||||    
T  55135662 aattttaccaaaccgataaatttagattttggatttaaagaaa 55135704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 181 - 327
Target Start/End: Complemental strand, 32000818 - 32000672
Alignment:
Q  181 aaaaattgtccatccaaatataccttcaaattccttaaattttttcacttccattttcttctaaacacaaaattcaaaattctcaaatttcataaaccct 280  Q
    |||||||||||||||||||| ||||||||||||||||||| ||| ||||||||| ||||| ||||||||||||||||||| ||||||||| |||||||||    
T  32000818 aaaaattgtccatccaaataaaccttcaaattccttaaatatttccacttccatcttcttttaaacacaaaattcaaaatactcaaattttataaaccct 32000719  T
Q  281 aagtttaccaaatccaaaaatttggattttggatttaaagaaagaaa 327  Q
    || ||| ||||| ||| |||| || ||||||||| ||||||||||||    
T  32000718 aaattttccaaacccataaatctgaattttggatataaagaaagaaa 32000672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 181 - 328
Target Start/End: Original strand, 54409773 - 54409920
Alignment:
Q  181 aaaaattgtccatccaaatataccttcaaattccttaaattttttcacttccattttcttctaaacacaaaattcaaaattctcaaatttcataaaccct 280  Q
    ||||||| |||||||||||| ||||||||||||||||||| ||| |  |||||| ||||||||||||||||||||||||| ||||||||| ||||||| |    
T  54409773 aaaaattatccatccaaataaaccttcaaattccttaaatatttccttttccatcttcttctaaacacaaaattcaaaatactcaaattttataaacctt 54409872  T
Q  281 aagtttaccaaatccaaaaatttggattttggatttaaagaaagaaac 328  Q
    | |||| ||||| ||| |||| || |||||||||||||||||||||||    
T  54409873 aggtttgccaaacccataaatctgaattttggatttaaagaaagaaac 54409920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 181 - 323
Target Start/End: Complemental strand, 39069993 - 39069851
Alignment:
Q  181 aaaaattgtccatccaaatataccttcaaattccttaaattttttcacttccattttcttctaaacacaaaattcaaaattctcaaatttcataaaccct 280  Q
    ||||||||| |||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||    
T  39069993 aaaaattgttcatccaaataaaccttcaaattccttaaatattttcacttccatcttcttctaaacacaaaattcaaaatccccaaatttcataaaccct 39069894  T
Q  281 aagtttaccaaatccaaaaatttggattttggatttaaagaaa 323  Q
    || ||||||||| | | ||||||||||||||||||||||||||    
T  39069893 aattttaccaaaccgataaatttggattttggatttaaagaaa 39069851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 181 - 266
Target Start/End: Original strand, 39069338 - 39069422
Alignment:
Q  181 aaaaattgtccatccaaatataccttcaaattccttaaattttttcacttccattttcttctaaacacaaaattcaaaattctcaa 266  Q
    ||||||||||||||||| || ||||||||||| ||||||| ||| ||||||||| ||||||||||||||||||||||||| |||||    
T  39069338 aaaaattgtccatccaa-taaaccttcaaatttcttaaatatttccacttccatcttcttctaaacacaaaattcaaaatactcaa 39069422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 10215166 - 10215103
Alignment:
Q  181 aaaaattgtccatccaaatataccttcaaattccttaaattttttcacttccattttcttctaa 244  Q
    ||||||| |||||| ||||| ||||||||||||||||||| ||||||| ||||| |||||||||    
T  10215166 aaaaattttccatctaaataaaccttcaaattccttaaatattttcacctccatcttcttctaa 10215103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 10214950 - 10214998
Alignment:
Q  265 aaatttcataaaccctaagtttaccaaatccaaaaatttggattttgga 313  Q
    ||||| |||||||||||||||||||||| ||| ||||||||||||||||    
T  10214950 aaattacataaaccctaagtttaccaaacccataaatttggattttgga 10214998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 256 - 328
Target Start/End: Original strand, 39069439 - 39069510
Alignment:
Q  256 aaaattctcaaatttcataaaccctaagtttaccaaatccaaaaatttggattttggatttaaagaaagaaac 328  Q
    ||||| ||||||||| ||||||||||||||| ||||| ||| |||| || ||||| |||||||||||||||||    
T  39069439 aaaatactcaaattt-ataaaccctaagtttgccaaacccataaatctgaattttagatttaaagaaagaaac 39069510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 9e-49; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 181 - 327
Target Start/End: Complemental strand, 47650404 - 47650258
Alignment:
Q  181 aaaaattgtccatccaaatataccttcaaattccttaaattttttcacttccattttcttctaaacacaaaattcaaaattctcaaatttcataaaccct 280  Q
    |||||||||||||||||| | ||||||||||||||||||| |||  |||||||| ||||||||||||||||||||||||| ||||||||| |||||||||    
T  47650404 aaaaattgtccatccaaacaaaccttcaaattccttaaatatttctacttccatcttcttctaaacacaaaattcaaaatactcaaattttataaaccct 47650305  T
Q  281 aagtttaccaaatccaaaaatttggattttggatttaaagaaagaaa 327  Q
    |||||||||||| ||| |||| || ||||||||||||||||||||||    
T  47650304 aagtttaccaaacccataaatctgaattttggatttaaagaaagaaa 47650258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 181 - 309
Target Start/End: Original strand, 47649780 - 47649908
Alignment:
Q  181 aaaaattgtccatccaaatataccttcaaattccttaaattttttcacttccattttcttctaaacacaaaattcaaaattctcaaatttcataaaccct 280  Q
    |||||||||||||||||||| ||||||||||| ||||||| ||||||||| ||| ||||||||||||| ||||||||||| | |||||||||||||||||    
T  47649780 aaaaattgtccatccaaataaaccttcaaatttcttaaatattttcactttcatcttcttctaaacaccaaattcaaaatccccaaatttcataaaccct 47649879  T
Q  281 aagtttaccaaatccaaaaatttggattt 309  Q
    || ||||||||| | | ||||||||||||    
T  47649880 aattttaccaaacctataaatttggattt 47649908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 9e-49; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 181 - 323
Target Start/End: Complemental strand, 21153648 - 21153506
Alignment:
Q  181 aaaaattgtccatccaaatataccttcaaattccttaaattttttcacttccattttcttctaaacacaaaattcaaaattctcaaatttcataaaccct 280  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||   |||||||||||||||||    
T  21153648 aaaaattgtccatccaaataaaccttcaaattccttaaatattttcacttccatcttcttctaaacacaaaattcaaaatcaccaaatttcataaaccct 21153549  T
Q  281 aagtttaccaaatccaaaaatttggattttggatttaaagaaa 323  Q
    || ||||| ||| | | ||||||||||||||||||||||||||    
T  21153548 aattttactaaacctataaatttggattttggatttaaagaaa 21153506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 181 - 323
Target Start/End: Complemental strand, 519455 - 519316
Alignment:
Q  181 aaaaattgtccatccaaatataccttcaaattccttaaattttttcacttccattttcttctaaacacaaaattcaaaattctcaaatttcataaaccct 280  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||   ||||||| ||||||||||||||| | |||||||||||||||||    
T  519455 aaaaattgtccatccaaataaaccttcaaattccttaaatattttcacttccat---cttctaatcacaaaattcaaaatccccaaatttcataaaccct 519359  T
Q  281 aagtttaccaaatccaaaaatttggattttggatttaaagaaa 323  Q
    || ||||||||| ||| ||||||||||||||||||||||||||    
T  519358 aattttaccaaacccataaatttggattttggatttaaagaaa 519316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 181 - 328
Target Start/End: Complemental strand, 27478697 - 27478550
Alignment:
Q  181 aaaaattgtccatccaaatataccttcaaattccttaaattttttcacttccattttcttctaaacacaaaattcaaaattctcaaatttcataaaccct 280  Q
    |||||||||| ||||||||| ||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||    
T  27478697 aaaaattgtcaatccaaataaaccttcaaattccttaaatatttccacttccatcttcttctaaacacaaaattcaaaatactcaaattttataaaccct 27478598  T
Q  281 aagtttaccaaatccaaaaatttggattttggatttaaagaaagaaac 328  Q
    | ||||  |||| ||| |||| || |||||||||||||||||||||||    
T  27478597 aggtttgtcaaacccataaatctgaattttggatttaaagaaagaaac 27478550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 181 - 328
Target Start/End: Original strand, 518833 - 518980
Alignment:
Q  181 aaaaattgtccatccaaatataccttcaaattccttaaattttttcacttccattttcttctaaacacaaaattcaaaattctcaaatttcataaaccct 280  Q
    |||||||||||||||||||| ||||||||||||||||||| |||  |||||||| |||||||||||  |||||||||||| ||||||||| ||||||| |    
T  518833 aaaaattgtccatccaaataaaccttcaaattccttaaatatttctacttccatcttcttctaaacttaaaattcaaaatactcaaattttataaacctt 518932  T
Q  281 aagtttaccaaatccaaaaatttggattttggatttaaagaaagaaac 328  Q
    |||||| ||||| ||| |||| || |||||||||||||||||||||||    
T  518933 aagtttgccaaacccataaatctgaattttggatttaaagaaagaaac 518980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 181 - 328
Target Start/End: Complemental strand, 10455383 - 10455236
Alignment:
Q  181 aaaaattgtccatccaaatataccttcaaattccttaaattttttcacttccattttcttctaaacacaaaattcaaaattctcaaatttcataaaccct 280  Q
    ||||||||| |||||||||| |||||||||||| |||||| ||||||||||||| ||||| ||||||||||||| ||||| ||||||||| |||||||||    
T  10455383 aaaaattgttcatccaaataaaccttcaaattctttaaatattttcacttccatcttcttttaaacacaaaatttaaaatactcaaattttataaaccct 10455284  T
Q  281 aagtttaccaaatccaaaaatttggattttggatttaaagaaagaaac 328  Q
    |||||| ||||| | | |||| || |||||||||||||||||||||||    
T  10455283 aagtttgccaaacctataaatctgaattttggatttaaagaaagaaac 10455236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 181 - 328
Target Start/End: Complemental strand, 24460358 - 24460212
Alignment:
Q  181 aaaaattgtccatccaaatataccttcaaattccttaaattttttcacttccattttcttctaaacacaaaattcaaaattctcaaatttcataaaccct 280  Q
    |||||||||||||||||||| ||||||||||||||||||| ||| || |||||| |||||||||||| |||||||||||| ||||||||| |||||||||    
T  24460358 aaaaattgtccatccaaataaaccttcaaattccttaaatatttccatttccatcttcttctaaacaaaaaattcaaaatactcaaattttataaaccct 24460259  T
Q  281 aagtttaccaaatccaaaaatttggattttggatttaaagaaagaaac 328  Q
    |||||| ||||| ||| |||| || ||||||||||| |||||||||||    
T  24460258 aagtttgccaaacccataaatctgaattttggattt-aagaaagaaac 24460212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 181 - 323
Target Start/End: Original strand, 24459777 - 24459918
Alignment:
Q  181 aaaaattgtccatccaaatataccttcaaattccttaaattttttcacttccattttcttctaaacacaaaattcaaaattctcaaatttcataaaccct 280  Q
    |||||||||||||||||||| ||| |||||||| |||||| ||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| | |    
T  24459777 aaaaattgtccatccaaataaaccatcaaattctttaaatattttcacttccatcttcttctaaacacaaaattcaaaatccccaaatttcataaa-cat 24459875  T
Q  281 aagtttaccaaatccaaaaatttggattttggatttaaagaaa 323  Q
    || ||||||||| ||| ||||||||||||| ||||||||||||    
T  24459876 aattttaccaaacccataaatttggatttttgatttaaagaaa 24459918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 181 - 323
Target Start/End: Original strand, 27478070 - 27478211
Alignment:
Q  181 aaaaattgtccatccaaatataccttcaaattccttaaattttttcacttccattttcttctaaacacaaaattcaaaattctcaaatttcataaaccct 280  Q
    |||||||||||||||||||| ||||||||||| ||||||| ||||||||||||| ||||||||||||||| ||||||| | | ||||||||||||| |||    
T  27478070 aaaaattgtccatccaaataaaccttcaaatttcttaaatattttcacttccatcttcttctaaacacaacattcaaagtccccaaatttcataaatcct 27478169  T
Q  281 aagtttaccaaatccaaaaatttggattttggatttaaagaaa 323  Q
    || ||||||||| | | |||||| |||||||||||||||||||    
T  27478170 aattttaccaaa-cgataaatttagattttggatttaaagaaa 27478211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 181 - 292
Target Start/End: Original strand, 21153026 - 21153137
Alignment:
Q  181 aaaaattgtccatccaaatataccttcaaattccttaaattttttcacttccattttcttctaaacacaaaattcaaaattctcaaatttcataaaccct 280  Q
    |||||||||||||||||||| ||||||||||||||||||| ||| ||||||||| || |||||||||||||||||||||| ||||||||| |||||||||    
T  21153026 aaaaattgtccatccaaataaaccttcaaattccttaaatatttccacttccatctttttctaaacacaaaattcaaaatactcaaattttataaaccct 21153125  T
Q  281 aagtttaccaaa 292  Q
    |||||| |||||    
T  21153126 aagtttgccaaa 21153137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 181 - 292
Target Start/End: Original strand, 20919472 - 20919580
Alignment:
Q  181 aaaaattgtccatccaaatataccttcaaattccttaaattttttcacttccattttcttctaaacacaaaattcaaaattctcaaatttcataaaccct 280  Q
    |||||||||||||| ||||| ||||||||||||||||||| |||||||||||||   ||||||||||||||||||||||| | |||||||||||||||||    
T  20919472 aaaaattgtccatctaaataaaccttcaaattccttaaatattttcacttccat---cttctaaacacaaaattcaaaatccccaaatttcataaaccct 20919568  T
Q  281 aagtttaccaaa 292  Q
    || |||||||||    
T  20919569 aattttaccaaa 20919580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 181 - 309
Target Start/End: Original strand, 10454760 - 10454891
Alignment:
Q  181 aaaaattgtccat--ccaaatataccttcaaatt-ccttaaattttttcacttccattttcttctaaacacaaaattcaaaattctcaaatttcataaac 277  Q
    |||||||||||||  ||||||| ||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||| | | ||||||||||||||    
T  10454760 aaaaattgtccatatccaaataaaccttcaaatttccttaaatattttcacttccatcttcttctaaacacaaaattcaaattccccaaatttcataaac 10454859  T
Q  278 cctaagtttaccaaatccaaaaatttggattt 309  Q
    || || ||||||||| ||| ||||||||||||    
T  10454860 ccgaattttaccaaacccataaatttggattt 10454891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 278
Target Start/End: Original strand, 20604941 - 20605039
Alignment:
Q  181 aaaaattgtccatccaaatataccttcaaattccttaaattttttcacttcca-ttttcttctaaacacaaaattcaaaattctcaaatttcataaacc 278  Q
    ||||| ||||||| |||||| || |||||||||||||||| ||||||| || | |||| |||| ||||||| ||||||||| |||||||||||| ||||    
T  20604941 aaaaaatgtccattcaaatacactttcaaattccttaaatattttcacatctactttttttcttaacacaacattcaaaatcctcaaatttcatgaacc 20605039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 181 - 323
Target Start/End: Complemental strand, 6720574 - 6720434
Alignment:
Q  181 aaaaattgtccatccaaatataccttcaaattccttaaat-tttttcacttccattttcttctaaacacaaaattcaaaattctcaaatttcataaaccc 279  Q
    ||||| |||||||||||||| ||||| ||||||||||||| ||||||||||||||   ||||||||||||||||||||||| | ||||||||||||||||    
T  6720574 aaaaactgtccatccaaataaaccttaaaattccttaaatatttttcacttccat---cttctaaacacaaaattcaaaatccccaaatttcataaaccc 6720478  T
Q  280 taagtttaccaaatccaaaaatttggattttggatttaaagaaa 323  Q
    ||| ||||||||| ||| |||||| |||||||||||||||||||    
T  6720477 taattttaccaaacccataaattttgattttggatttaaagaaa 6720434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 181 - 324
Target Start/End: Original strand, 6719952 - 6720095
Alignment:
Q  181 aaaaattgtccatccaaatataccttcaaattccttaaattttttcacttccattttcttctaaacacaaaattcaaaattctcaaatttcataaaccct 280  Q
    |||||||  ||||||||||| ||||||||||||||||||| ||| ||| ||||| ||||| ||||||||||||||||||| ||||||||| |||||||||    
T  6719952 aaaaatttcccatccaaataaaccttcaaattccttaaatatttccacgtccatcttcttttaaacacaaaattcaaaatactcaaattttataaaccct 6720051  T
Q  281 aagtttaccaaatccaaaaatttggattttggatttaaagaaag 324  Q
    || ||| ||||||||| |||| || |||| ||||||||||||||    
T  6720052 aattttgccaaatccataaatctgaatttcggatttaaagaaag 6720095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University