View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19013_low_12 (Length: 341)
Name: NF19013_low_12
Description: NF19013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19013_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 45671549 - 45671861
Alignment:
| Q |
19 |
acctcctggtaactcttctcttatcaaattcctttctctatctgcttgtgtgtttcttgtggttggaatgtgtggtgcaaacatatagataatgtttcga |
118 |
Q |
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| T |
45671549 |
acctcctggtaactcttctcttatcaaattcctttctctatctgcttgtgtgtttcttgtggttggaatgtgtggtgcaaacatatagataatgtttcga |
45671648 |
T |
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| Q |
119 |
gtctgaaaataattcggagtttaacgaggagggacaccgataattcggagtttaactgaaagataaataaatatgacaaataattatttcaactaagatt |
218 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45671649 |
gtctgaaaataattcggagtttaactaggagggacaccgataattcggagtttaactgaaagataaataaatatgacaaataattatttcaactaagatt |
45671748 |
T |
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| Q |
219 |
ctaattcggctactccaaatcgaacatatagttaatatggcatgtcttttgtgcacaattgttttatttctgattttttgtgtgttcaagatctgtgcaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45671749 |
ctaattcggctactccaaatcgaacatatagttaatatggcatgtcttttgtgcacaattgttttctttctgattttttgtgtgttcaagatctgtgcaa |
45671848 |
T |
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| Q |
319 |
ttcagtccctatg |
331 |
Q |
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|||||||| |||| |
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| T |
45671849 |
ttcagtccttatg |
45671861 |
T |
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