View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19013_low_17 (Length: 248)
Name: NF19013_low_17
Description: NF19013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19013_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 39848927 - 39849146
Alignment:
| Q |
14 |
aatatacgagggtgactgggttgataaaaaagtgacagagaaaggtctgaagatatggacccttcaaaatcctcatggttccacttcattgcagatttca |
113 |
Q |
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| T |
39848927 |
aatatacgagggtgattgggttgataaaaaagtgacagagaaaggtctgaagatatggacccttcaaaattctcatggttccacttcattgcagatttca |
39849026 |
T |
|
| Q |
114 |
aataaaggtcagtctgaggcatctggtctgagccctttgggtatcaaaagggagtatatgcaaggagttttaattgtggagaaaatcagaccgtattcag |
213 |
Q |
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||||||||||||||||||| |||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39849027 |
aataaaggtcagtctgaggtatctagtctgagccctttggttatcaaaagggaatatatgcaaggagttttaattgtggagaaaatcagaccgtattcag |
39849126 |
T |
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| Q |
214 |
aagtaacacataataataat |
233 |
Q |
| |
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|||||||||||||||||||| |
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| T |
39849127 |
aagtaacacataataataat |
39849146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 32 - 232
Target Start/End: Original strand, 38633233 - 38633436
Alignment:
| Q |
32 |
ggttgataaaaaagtgacagagaaaggt---ctgaagatatggacccttcaaaatcctcatggttccacttcattgcagatttcaaataaaggtcagtct |
128 |
Q |
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|||||||||||||||||||||||||| |||| ||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
38633233 |
ggttgataaaaaagtgacagagaaagaagaactgatgatatgggcccttcaaaatcccgatggatccacttcattgcagatttcaaataaaggtcagtct |
38633332 |
T |
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| Q |
129 |
gaggcatctggtctgagccctttgggtatcaaaagggagtatatgcaaggagttttaattgtggagaaaatcagaccgtattcagaagtaacacataata |
228 |
Q |
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| T |
38633333 |
aaggcatctggtgccagccctctgcttatcgaaagggaatgtatgcaaggagttctaattgtggagaaaattagacagtattcagaagtaacacataata |
38633432 |
T |
|
| Q |
229 |
ataa |
232 |
Q |
| |
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|||| |
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| T |
38633433 |
ataa |
38633436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 38453421 - 38453344
Alignment:
| Q |
155 |
tatcaaaagggagtatatgcaaggagttttaattgtggagaaaatcagaccgtattcagaagtaacacataataataa |
232 |
Q |
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|||| ||| ||| ||||||||| ||||| | |||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
38453421 |
tatcgaaatggaatatatgcaaagagttctgattgtggagaaaattagaccatattcagaagtaacacataataataa |
38453344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 34916705 - 34916661
Alignment:
| Q |
14 |
aatatacgagggtgactgggttgataaaaaagtgacagagaaagg |
58 |
Q |
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| T |
34916705 |
aatatacgagggtgactgggttgatggaaaagtgacagggaaagg |
34916661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 34544985 - 34544941
Alignment:
| Q |
14 |
aatatacgagggtgactgggttgataaaaaagtgacagagaaagg |
58 |
Q |
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||||||||||||||||||||||||| |||| |||||| |||||| |
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| T |
34544985 |
aatatacgagggtgactgggttgatggaaaaatgacagggaaagg |
34544941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 33 - 231
Target Start/End: Complemental strand, 7045737 - 7045543
Alignment:
| Q |
33 |
gttgataaaaaagtgacagagaaaggtctgaagatatggacccttcaaaatcctcatggttccacttcattgcagatttcaaataaaggtcagtctgagg |
132 |
Q |
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|||||| ||||||||| ||||||||| || | |||||||| || |||||||||| |||| || || || |||||||||||||||||||| ||| |
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| T |
7045737 |
gttgatgaaaaagtgatagagaaaggactaatgatatggagccctcaaaatcctgatggg----ctacactgtcaatttcaaataaaggtcagtcgaagg |
7045642 |
T |
|
| Q |
133 |
catctggtctgagccctttgggtatcaaaagggagtatatgcaaggagttttaattgtggagaaaatcagaccgtattcagaagtaacacataataata |
231 |
Q |
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| T |
7045641 |
tatctggtgtgatctctttgattatcaaaagaaaatatatgcaaggagttctaattgtggagaaaattaaataggattcagaagtaacatataataata |
7045543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 44475289 - 44475353
Alignment:
| Q |
168 |
tatatgcaaggagttttaattgtggagaaaatcagaccgtattcagaagtaacacataataataa |
232 |
Q |
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|||||| | |||||| |||||||||||||||| ||| ||||||| ||||||||||||| ||||| |
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| T |
44475289 |
tatatgaatggagttctaattgtggagaaaattcgacagtattcaaaagtaacacataaaaataa |
44475353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 44474822 - 44474873
Alignment:
| Q |
40 |
aaaaagtgacagagaaaggtctgaagatatggacccttcaaaatcctcatgg |
91 |
Q |
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||||||||| ||||||||| |||| |||||||| ||||||||||||| |||| |
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| T |
44474822 |
aaaaagtgatagagaaaggactgatgatatggagccttcaaaatcctaatgg |
44474873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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