View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19013_low_23 (Length: 237)
Name: NF19013_low_23
Description: NF19013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19013_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 41702989 - 41702761
Alignment:
| Q |
1 |
ccaattctccaattttaatctgtgattcaccaatcatttttcttaacacacccaattcaatatcatcttcctcccattttttctttaacttcttcaactc |
100 |
Q |
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| T |
41702989 |
ccaattctccaattttactctgtaattcaccaatcatttttcttaacacacccaattcaatatcatcttcctcccattttttctttaacttcttcaactc |
41702890 |
T |
|
| Q |
101 |
caaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcattgttcttcttttctaacgcttcattactttttctatttaccttaacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41702889 |
caaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcattgttcttcttttctaacgcttcattactttttctatttaccttaacc |
41702790 |
T |
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| Q |
201 |
tctttcaagagagcttcataatattcttg |
229 |
Q |
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|||||||||||||||||||||| |||||| |
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| T |
41702789 |
tctttcaagagagcttcataattttcttg |
41702761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 155
Target Start/End: Original strand, 41469655 - 41469785
Alignment:
| Q |
25 |
attcaccaatcatttttcttaacacacccaattcaatatcatcttcctcccattttttctttaacttcttcaactccaaaacttcattctctaattcaac |
124 |
Q |
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|||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| | ||| || ||||| |||||||||| |||||||||||| |
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| T |
41469655 |
attcaccagacatttttcttaattcacccaattcaatgtcatcttcctcccattttttcttaatcttgtttaactctaaaacttcatcctctaattcaac |
41469754 |
T |
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| Q |
125 |
aatctttcttcttaacacatcaacttcattg |
155 |
Q |
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| T |
41469755 |
aatctttgttcttattacatcaacttcattg |
41469785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 84 - 155
Target Start/End: Original strand, 41499628 - 41499699
Alignment:
| Q |
84 |
tttaacttcttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcattg |
155 |
Q |
| |
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||||| ||| |||||||||||| |||| |||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
41499628 |
tttaatttcctcaactccaaaatttcagattctaattcaacaatctttgttcttaacacaccaacttcattg |
41499699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 41509401 - 41509462
Alignment:
| Q |
93 |
ttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcatt |
154 |
Q |
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|||||||||||||||||||| ||||||||||| ||||| ||||||||| ||||| |||||| |
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| T |
41509401 |
ttcaactccaaaacttcattgtctaattcaaccttcttttttcttaacatatcaagttcatt |
41509462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 41499525 - 41499605
Alignment:
| Q |
74 |
ccattttttctttaacttcttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcatt |
154 |
Q |
| |
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|||||||||||| |||||| |||||||||||||||||| |||||||| | ||||| || ||||| |||| ||| |||||| |
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| T |
41499525 |
ccattttttcttcaacttcctcaactccaaaacttcatgctctaatttaccaatcatttctcttagcacaacaagttcatt |
41499605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 41515440 - 41515508
Alignment:
| Q |
87 |
aacttcttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcattg |
155 |
Q |
| |
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|||||| |||||||||||| |||| |||||||||| || |||||||||||||||||| || ||||||| |
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| T |
41515440 |
aacttcctcaactccaaaatttcagactctaattcaccattctttcttcttaacacataaatttcattg |
41515508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 41519624 - 41519686
Alignment:
| Q |
93 |
ttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcattg |
155 |
Q |
| |
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|||||||||||||||||||| ||||||||| | ||||| ||||||||| ||||| ||||||| |
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| T |
41519624 |
ttcaactccaaaacttcattgtctaattcacccttcttttttcttaacatatcaagttcattg |
41519686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 41469833 - 41469873
Alignment:
| Q |
149 |
ttcattgttcttcttttctaacgcttcattactttttctat |
189 |
Q |
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| T |
41469833 |
ttcattgttcttcttttctaactctacattagtttttctat |
41469873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 41469881 - 41469917
Alignment:
| Q |
185 |
tctatttaccttaacctctttcaagagagcttcataa |
221 |
Q |
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||||||||||||||| |||||||| |||||||||||| |
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| T |
41469881 |
tctatttaccttaacttctttcaaaagagcttcataa |
41469917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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