View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19013_low_6 (Length: 466)
Name: NF19013_low_6
Description: NF19013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19013_low_6 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 200 - 466
Target Start/End: Original strand, 35047735 - 35048001
Alignment:
| Q |
200 |
ctctcaattaaactaacaaggaagtctaaaaatataaaacatttttcacaatatttgcagtcattaattctagctggcacagacactacaacatcaacat |
299 |
Q |
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| T |
35047735 |
ctctcaattaaactaacaaggaagtctaaaaatataaaacatttttcacaatatttgcagtcattaattctagctggcacagacactacaacatcaacat |
35047834 |
T |
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| Q |
300 |
taacttgggctctatgtttacttctcaacaaccgtgaaatcctcaacaaggccgtacaagaattagatacacaaattggtagagaaaagatggtaatgga |
399 |
Q |
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| T |
35047835 |
taacttgggctctatgtttacttctcaacaaccgtgaaatcctcagcaaggccgtacaagaattagatacacaaattggtagagaaaagatggtaatgga |
35047934 |
T |
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| Q |
400 |
atcagatttgcacaagttagagtatcttcaagctattatcaaggaaacaatgcgcttgtgtccaacc |
466 |
Q |
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| T |
35047935 |
atcagatttgcacaagttagagtatcttcaagctattatcaaggaaacaatgcgcttgtgtccaacc |
35048001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 35047534 - 35047662
Alignment:
| Q |
1 |
gttggctttgagaatttagatatttttgttgatcgatttgattcattctttgcgcccaaatatttgaattgtgatcttttattggacacaagaagacgaa |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35047534 |
gttgtctttgagaatttagatatttttgttgatcgatttgattcattctttgcgcccaaatatttgaattgtgatcttttattggacacaagaagacgaa |
35047633 |
T |
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| Q |
101 |
gacttgaatcatagtttgcatcatttgtc |
129 |
Q |
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| T |
35047634 |
gacttgaatcatagtttgcatcatttgtc |
35047662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 253 - 453
Target Start/End: Original strand, 35026203 - 35026403
Alignment:
| Q |
253 |
tttgcagtcattaattctagctggcacagacactacaacatcaacattaacttgggctctatgtttacttctcaacaaccgtgaaatcctcaacaaggcc |
352 |
Q |
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||||||| || |||||||||| | |||||||||||| || |||||| |||||| |||||| ||||||||| ||||| ||||| |||| ||||| | | |
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| T |
35026203 |
tttgcaggcactaattctagcagctacagacactacagcaggaacattgacttggactctatctttacttcttaacaatcgtgaggtcctaaacaaagtc |
35026302 |
T |
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| Q |
353 |
gtacaagaattagatacacaaattggtagagaaaagatggtaatggaatcagatttgcacaagttagagtatcttcaagctattatcaaggaaacaatgc |
452 |
Q |
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| T |
35026303 |
attcatgaattagatacacaaattggtaaggaaaagatggcaatacaaacagatttgacgaagttggagtatcttcaagccattatcaaagaaacattgc |
35026402 |
T |
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| Q |
453 |
g |
453 |
Q |
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| T |
35026403 |
g |
35026403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 253 - 458
Target Start/End: Original strand, 35032149 - 35032354
Alignment:
| Q |
253 |
tttgcagtcattaattctagctggcacagacactacaacatcaacattaacttgggctctatgtttacttctcaacaaccgtgaaatcctcaacaaggcc |
352 |
Q |
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| T |
35032149 |
tttgcaggcattaattctagcggctacagatactaccgcaggaacattgacatggtcactatctttacttcttaacaatcctgaagttctaaacaaagcc |
35032248 |
T |
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| Q |
353 |
gtacaagaattagatacacaaattggtagagaaaagatggtaatggaatcagatttgcacaagttagagtatcttcaagctattatcaaggaaacaatgc |
452 |
Q |
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| T |
35032249 |
attcaagaattagatacacaaattggtatggaaaatatggcaataaaatcagatttggcaaagttggagtatctccaagccattatcaaggaaacattgc |
35032348 |
T |
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| Q |
453 |
gcttgt |
458 |
Q |
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| T |
35032349 |
gtttgt |
35032354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 253 - 453
Target Start/End: Original strand, 35040166 - 35040366
Alignment:
| Q |
253 |
tttgcagtcattaattctagctggcacagacactacaacatcaacattaacttgggctctatgtttacttctcaacaaccgtgaaatcctcaacaaggcc |
352 |
Q |
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||||||| || |||||||||| || ||||||||||| || | ||||| || ||| || | | ||||||||| ||||| | |||| | | ||||| ||| |
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| T |
35040166 |
tttgcaggcactaattctagcaggtacagacactaccgcagcgacattgacctggtctgtttctttacttcttaacaatcctgaagttttaaacaaagcc |
35040265 |
T |
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| Q |
353 |
gtacaagaattagatacacaaattggtagagaaaagatggtaatggaatcaga-tttgcacaagttagagtatcttcaagctattatcaaggaaacaatg |
451 |
Q |
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| T |
35040266 |
attcaagaattagatacacaaattggtatggaaaatatggcaatagaatcagattttgca-aagtttgaatatctcaaagccattatcaaggaaacattg |
35040364 |
T |
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| Q |
452 |
cg |
453 |
Q |
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|| |
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| T |
35040365 |
cg |
35040366 |
T |
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